Het-PDB Navi2 (PDB: 1BS7)

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Ligands
Code	Name		Style	Show	Link
NI	Nickel (II) ion				PoSSuM

Non-standard Residues
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Glycosylation
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Download interaction data: 1BS7

Code :

1BS7 PDBj RCSB PDB PDBe

Header :

HYDROLASE

Title :

PEPTIDE DEFORMYLASE AS NI2+ CONTAINING FORM

Release Data :

1999-08-27

Compound :

mol_id	molecule	chains	synonym
1	PROTEIN (PEPTIDE DEFORMYLASE)	A,B,C	PDF
	ec: 3.5.1.31 other_details: PDF PROTEIN FROM ESCHERICHIA COLI IS CRYSTALLIZED AS NI2+ CONTAINING FORM

Source :

mol_id	organism_scientific	expression_system
1	Escherichia coli (taxid:562)	Escherichia coli (taxid:562)
	strain: JM109 cellular_location: CYTOPLASMA gene: DEF expression_system_strain: JM109 expression_system_vector_type: PLASMID expression_system_vector: PKK223-3 (PHARMACIA) expression_system_plasmid: P925C expression_system_gene: DEF

Authors :

Becker, A., Schlichting, I., Kabsch, W., Groche, D., Schultz, S., Wagner, A.F.V.

Keywords :

HYDROLASE, IRON METALLOPROTEASE; PROTEIN SYNTHESIS

Exp. method :

X-RAY DIFFRACTION ( 2.5 Å )

Citation :

Structure of peptide deformylase and identification of the substrate binding site.

Becker, A.,Schlichting, I.,Kabsch, W. et al.
(1998) J.Biol.Chem. 273 : 11413 - 11416

PubMed: 9565550
DOI: 10.1074/jbc.273.19.11413

Iron Center, Substrate Recognition and Mechanism of Peptide Deformylase

Becker, A.,Schlichting, I.,Kabsch, W. et al.
(1998) Nat.Struct.Biol. 5 : 1053

Isolation and Crystallization of Functionally Competent Escherichia Coli Peptide Deformylase Forms Containing Either Iron or Nickel in the Active Site

Groche, D.,Becker, A.,Schlichting, I. et al.
(1998) Biochem.Biophys.Res.Commun. 246 : 342

Chain :

A, B, C

UniProt :

P0A6K3 (DEF_ECOLI)

Reaction:	EC:	Evidence:
Reaction:	Physiological Direction:	Evidence:
H2O + N-terminal N-formyl-L-methionyl-[peptide] = formate + N- terminal L-methionyl-[peptide]	3.5.1.88	PubMed:7896716
	right-to-left	PubMed:7896716

PDB ID: 1BS7

Hetero Atom Contents

Structure summary

Reaction