ID 6JTCA STANDARD; PRT; 720 AA. DT CONVERTED FROM PDB (SEQRES) 6JTC DE Asp/Glu-specific dipeptidyl-peptidase OS Porphyromonas gingivalis (strain ATCC 33277 / DSM 20709 / CIP 103683 / JCM CC EXPDTA X-RAY DIFFRACTION CC RESOLU 2.390 CC R-Factor 0.205 FT #SUB 221 221 TRP A 592 592 ASN B Protein S 3 FT #SUB 222 222 PRO A 592 592 ASN B Protein S 3 FT #SUB 222 222 PRO A 593 593 VAL B Protein S 1 FT #SUB 224 224 HIS A 591 591 ASP B Protein S 4 FT #SUB 312 312 ARG A 312 312 ARG B Protein S 4 FT #SUB 312 312 ARG A 316 316 ALA B Protein S 1 FT #SUB 316 316 ALA A 312 312 ARG B Protein S 1 FT #SUB 590 590 ARG A 606 606 GLU B Protein A 3 FT #SUB 591 591 ASP A 224 224 HIS B Protein S 4 FT #SUB 591 591 ASP A 599 599 THR B Protein S 4 FT #SUB 591 591 ASP A 600 600 THR B Protein S 11 FT #SUB 591 591 ASP A 603 603 GLY B Protein S 6 FT #SUB 591 591 ASP A 606 606 GLU B Protein A 5 FT #SUB 592 592 ASN A 221 221 TRP B Protein S 3 FT #SUB 592 592 ASN A 594 594 TYR B Protein B 1 FT #SUB 592 592 ASN A 595 595 TYR B Protein A 3 FT #SUB 592 592 ASN A 596 596 GLY B Protein A 13 FT #SUB 592 592 ASN A 597 597 HIS B Protein S 1 FT #SUB 592 592 ASN A 598 598 GLN B Protein S 8 FT #SUB 592 592 ASN A 599 599 THR B Protein S 2 FT #SUB 593 593 VAL A 222 222 PRO B Protein S 1 FT #SUB 593 593 VAL A 594 594 TYR B Protein B 2 FT #SUB 593 593 VAL A 595 595 TYR B Protein S 2 FT #SUB 594 594 TYR A 592 592 ASN B Protein B 1 FT #SUB 594 594 TYR A 593 593 VAL B Protein B 2 FT #SUB 594 594 TYR A 594 594 TYR B Protein A 7 FT #SUB 595 595 TYR A 592 592 ASN B Protein B 2 FT #SUB 595 595 TYR A 593 593 VAL B Protein S 1 FT #SUB 596 596 GLY A 592 592 ASN B Protein B 13 FT #SUB 597 597 HIS A 592 592 ASN B Protein B 1 FT #SUB 598 598 GLN A 592 592 ASN B Protein B 6 FT #SUB 599 599 THR A 591 591 ASP B Protein A 4 FT #SUB 600 600 THR A 591 591 ASP B Protein A 9 FT #SUB 603 603 GLY A 591 591 ASP B Protein B 6 FT #SUB 606 606 GLU A 590 590 ARG B Protein S 4 FT #SUB 606 606 GLU A 591 591 ASP B Protein S 5 FT #HET 85 85 HIS A 2 802 C8O A S 2 FT #HET 218 218 ASN A 2 802 C8O A S 1 FT #HET 219 219 TRP A 2 802 C8O A S 10 FT #HET 391 391 ARG A 1 801 GOL A S 3 FT #HET 395 395 TRP A 1 801 GOL A S 1 FT #HET 539 539 TYR A 1 801 GOL A S 1 FT #HET 546 546 ASP A 1 801 GOL A S 3 FT #HET 650 650 THR A 2 802 C8O A A 9 FT #HET 651 651 THR A 2 802 C8O A B 12 FT #HET 652 652 GLY A 2 802 C8O A B 2 FT #HET 654 654 ASN A 2 802 C8O A A 3 FT #HET 655 655 SER A 2 802 C8O A S 3 FT #HET 670 670 ASN A 2 802 C8O A S 3 FT #HET 671 671 PHE A 2 802 C8O A B 2 FT #HET 672 672 ASP A 2 802 C8O A A 11 FT #HET 673 673 ARG A 2 802 C8O A S 6 FT DISORDER 1 21 CC SEQUENCE 699 AA (ATOM); CC DEGMWLMQQL GRKYAQMKER GLKMKEYDLY NPNGTSLKDA VVLFDGGCTG EVVSDRGLVL CC TNHHCGYDMI QAHSTLEHNY LENGFWAMRE ADELPNKDIS VVFIDKIEDV TDYVKKELKA CC IKDPNSMDYL SPKYLQKLAD KKAGKNFSAK NPGLSVEIKA FYGGNLYLMF TKKTYTDVRL CC VGAPPSSIGK FGADTDNWIW PRHTGDFSIF RIYADKNGNP APYSEDNVPL KPKRFFNISL CC GGVQENDYAM IMGFPGTTHR YFTASEVDEW KSIDNDIRIR MRDIRQGVML REMLADPQIK CC IMYSAKYAAS QNAYKRAIGA NWAIKTRGLR QNKQAMQDRL IAWGAKQGTP RYEEAVHEID CC ATVAKRADLR RRYWMIEEGI IRGIEFARSP IPTEDETKAL QGNDASARKE AIDKIRTRYS CC KFANKDYSAE VDKKVAVAML TEYLKEIPYE NLPLHLRLVK DRFAGDVQAY VDDIFARSVF CC GSEAQFDAFA AVPSVEKLAE DPMVLFASSV FDEYRKLYNE LRPYDDPILR AQRTYIAGLL CC EMDGDQDQFP DANLTLRFTY GQVKGYSPRD NVYYGHQTTL DGVMEKEDPD NWEFVVDPKL CC KAVYERKDFG RYADRSGRMP VAFCATTHTT GGNSGSPVMN ANGELIGLNF DRNWEGVGGD CC IQYLADYQRS IIVDIRYVLL VIDKVGGCQR LLDEMNIVP CC !---- CC ALIGNMENT OF SEQRES AND ATOMRES CC SEQRES MKKRLLLPLFAALCLSQIAHADEGMWLMQQLGRKYAQMKERGLKMKEYDL CC ATOM ---------------------DEGMWLMQQLGRKYAQMKERGLKMKEYDL CC ***************************** CC SEQRES YNPNGTSLKDAVVLFDGGCTGEVVSDRGLVLTNHHCGYDMIQAHSTLEHN CC ATOM YNPNGTSLKDAVVLFDGGCTGEVVSDRGLVLTNHHCGYDMIQAHSTLEHN CC ************************************************** CC SEQRES YLENGFWAMREADELPNKDISVVFIDKIEDVTDYVKKELKAIKDPNSMDY CC ATOM YLENGFWAMREADELPNKDISVVFIDKIEDVTDYVKKELKAIKDPNSMDY CC ************************************************** CC SEQRES LSPKYLQKLADKKAGKNFSAKNPGLSVEIKAFYGGNLYLMFTKKTYTDVR CC ATOM LSPKYLQKLADKKAGKNFSAKNPGLSVEIKAFYGGNLYLMFTKKTYTDVR CC ************************************************** CC SEQRES LVGAPPSSIGKFGADTDNWIWPRHTGDFSIFRIYADKNGNPAPYSEDNVP CC ATOM LVGAPPSSIGKFGADTDNWIWPRHTGDFSIFRIYADKNGNPAPYSEDNVP CC ************************************************** CC SEQRES LKPKRFFNISLGGVQENDYAMIMGFPGTTHRYFTASEVDEWKSIDNDIRI CC ATOM LKPKRFFNISLGGVQENDYAMIMGFPGTTHRYFTASEVDEWKSIDNDIRI CC ************************************************** CC SEQRES RMRDIRQGVMLREMLADPQIKIMYSAKYAASQNAYKRAIGANWAIKTRGL CC ATOM RMRDIRQGVMLREMLADPQIKIMYSAKYAASQNAYKRAIGANWAIKTRGL CC ************************************************** CC SEQRES RQNKQAMQDRLIAWGAKQGTPRYEEAVHEIDATVAKRADLRRRYWMIEEG CC ATOM RQNKQAMQDRLIAWGAKQGTPRYEEAVHEIDATVAKRADLRRRYWMIEEG CC ************************************************** CC SEQRES IIRGIEFARSPIPTEDETKALQGNDASARKEAIDKIRTRYSKFANKDYSA CC ATOM IIRGIEFARSPIPTEDETKALQGNDASARKEAIDKIRTRYSKFANKDYSA CC ************************************************** CC SEQRES EVDKKVAVAMLTEYLKEIPYENLPLHLRLVKDRFAGDVQAYVDDIFARSV CC ATOM EVDKKVAVAMLTEYLKEIPYENLPLHLRLVKDRFAGDVQAYVDDIFARSV CC ************************************************** CC SEQRES FGSEAQFDAFAAVPSVEKLAEDPMVLFASSVFDEYRKLYNELRPYDDPIL CC ATOM FGSEAQFDAFAAVPSVEKLAEDPMVLFASSVFDEYRKLYNELRPYDDPIL CC ************************************************** CC SEQRES RAQRTYIAGLLEMDGDQDQFPDANLTLRFTYGQVKGYSPRDNVYYGHQTT CC ATOM RAQRTYIAGLLEMDGDQDQFPDANLTLRFTYGQVKGYSPRDNVYYGHQTT CC ************************************************** CC SEQRES LDGVMEKEDPDNWEFVVDPKLKAVYERKDFGRYADRSGRMPVAFCATTHT CC ATOM LDGVMEKEDPDNWEFVVDPKLKAVYERKDFGRYADRSGRMPVAFCATTHT CC ************************************************** CC SEQRES TGGNSGSPVMNANGELIGLNFDRNWEGVGGDIQYLADYQRSIIVDIRYVL CC ATOM TGGNSGSPVMNANGELIGLNFDRNWEGVGGDIQYLADYQRSIIVDIRYVL CC ************************************************** CC SEQRES LVIDKVGGCQRLLDEMNIVP CC ATOM LVIDKVGGCQRLLDEMNIVP CC ******************** SQ SEQUENCE 720 AA; MW; CN; MKKRLLLPLF AALCLSQIAH ADEGMWLMQQ LGRKYAQMKE RGLKMKEYDL YNPNGTSLKD AVVLFDGGCT GEVVSDRGLV LTNHHCGYDM IQAHSTLEHN YLENGFWAMR EADELPNKDI SVVFIDKIED VTDYVKKELK AIKDPNSMDY LSPKYLQKLA DKKAGKNFSA KNPGLSVEIK AFYGGNLYLM FTKKTYTDVR LVGAPPSSIG KFGADTDNWI WPRHTGDFSI FRIYADKNGN PAPYSEDNVP LKPKRFFNIS LGGVQENDYA MIMGFPGTTH RYFTASEVDE WKSIDNDIRI RMRDIRQGVM LREMLADPQI KIMYSAKYAA SQNAYKRAIG ANWAIKTRGL RQNKQAMQDR LIAWGAKQGT PRYEEAVHEI DATVAKRADL RRRYWMIEEG IIRGIEFARS PIPTEDETKA LQGNDASARK EAIDKIRTRY SKFANKDYSA EVDKKVAVAM LTEYLKEIPY ENLPLHLRLV KDRFAGDVQA YVDDIFARSV FGSEAQFDAF AAVPSVEKLA EDPMVLFASS VFDEYRKLYN ELRPYDDPIL RAQRTYIAGL LEMDGDQDQF PDANLTLRFT YGQVKGYSPR DNVYYGHQTT LDGVMEKEDP DNWEFVVDPK LKAVYERKDF GRYADRSGRM PVAFCATTHT TGGNSGSPVM NANGELIGLN FDRNWEGVGG DIQYLADYQR SIIVDIRYVL LVIDKVGGCQ RLLDEMNIVP // ID 6JTCB STANDARD; PRT; 720 AA. DT CONVERTED FROM PDB (SEQRES) 6JTC DE Asp/Glu-specific dipeptidyl-peptidase OS Porphyromonas gingivalis (strain ATCC 33277 / DSM 20709 / CIP 103683 / JCM CC EXPDTA X-RAY DIFFRACTION CC RESOLU 2.390 CC R-Factor 0.205 FT #SUB 221 221 TRP B 592 592 ASN A Protein S 3 FT #SUB 222 222 PRO B 593 593 VAL A Protein S 1 FT #SUB 224 224 HIS B 591 591 ASP A Protein S 4 FT #SUB 312 312 ARG B 312 312 ARG A Protein S 4 FT #SUB 312 312 ARG B 316 316 ALA A Protein S 1 FT #SUB 316 316 ALA B 312 312 ARG A Protein S 1 FT #SUB 590 590 ARG B 606 606 GLU A Protein A 4 FT #SUB 591 591 ASP B 224 224 HIS A Protein S 4 FT #SUB 591 591 ASP B 599 599 THR A Protein S 4 FT #SUB 591 591 ASP B 600 600 THR A Protein S 9 FT #SUB 591 591 ASP B 603 603 GLY A Protein S 6 FT #SUB 591 591 ASP B 606 606 GLU A Protein A 5 FT #SUB 592 592 ASN B 221 221 TRP A Protein S 3 FT #SUB 592 592 ASN B 222 222 PRO A Protein A 3 FT #SUB 592 592 ASN B 594 594 TYR A Protein B 1 FT #SUB 592 592 ASN B 595 595 TYR A Protein B 2 FT #SUB 592 592 ASN B 596 596 GLY A Protein A 13 FT #SUB 592 592 ASN B 597 597 HIS A Protein S 1 FT #SUB 592 592 ASN B 598 598 GLN A Protein S 6 FT #SUB 593 593 VAL B 222 222 PRO A Protein S 1 FT #SUB 593 593 VAL B 594 594 TYR A Protein B 2 FT #SUB 593 593 VAL B 595 595 TYR A Protein S 1 FT #SUB 594 594 TYR B 592 592 ASN A Protein B 1 FT #SUB 594 594 TYR B 593 593 VAL A Protein B 2 FT #SUB 594 594 TYR B 594 594 TYR A Protein B 7 FT #SUB 595 595 TYR B 592 592 ASN A Protein B 3 FT #SUB 595 595 TYR B 593 593 VAL A Protein S 2 FT #SUB 596 596 GLY B 592 592 ASN A Protein B 13 FT #SUB 597 597 HIS B 592 592 ASN A Protein B 1 FT #SUB 598 598 GLN B 592 592 ASN A Protein B 8 FT #SUB 599 599 THR B 591 591 ASP A Protein A 4 FT #SUB 599 599 THR B 592 592 ASN A Protein S 2 FT #SUB 600 600 THR B 591 591 ASP A Protein A 11 FT #SUB 603 603 GLY B 591 591 ASP A Protein B 6 FT #SUB 606 606 GLU B 590 590 ARG A Protein S 3 FT #SUB 606 606 GLU B 591 591 ASP A Protein S 5 FT #HET 218 218 ASN B 3 801 C8O B S 4 FT #HET 219 219 TRP B 3 801 C8O B S 10 FT #HET 650 650 THR B 3 801 C8O B A 8 FT #HET 651 651 THR B 3 801 C8O B B 11 FT #HET 652 652 GLY B 3 801 C8O B B 5 FT #HET 654 654 ASN B 3 801 C8O B A 5 FT #HET 655 655 SER B 3 801 C8O B A 4 FT #HET 670 670 ASN B 3 801 C8O B S 3 FT #HET 671 671 PHE B 3 801 C8O B B 4 FT #HET 672 672 ASP B 3 801 C8O B A 15 FT #HET 673 673 ARG B 3 801 C8O B S 6 FT DISORDER 1 21 CC SEQUENCE 699 AA (ATOM); CC DEGMWLMQQL GRKYAQMKER GLKMKEYDLY NPNGTSLKDA VVLFDGGCTG EVVSDRGLVL CC TNHHCGYDMI QAHSTLEHNY LENGFWAMRE ADELPNKDIS VVFIDKIEDV TDYVKKELKA CC IKDPNSMDYL SPKYLQKLAD KKAGKNFSAK NPGLSVEIKA FYGGNLYLMF TKKTYTDVRL CC VGAPPSSIGK FGADTDNWIW PRHTGDFSIF RIYADKNGNP APYSEDNVPL KPKRFFNISL CC GGVQENDYAM IMGFPGTTHR YFTASEVDEW KSIDNDIRIR MRDIRQGVML REMLADPQIK CC IMYSAKYAAS QNAYKRAIGA NWAIKTRGLR QNKQAMQDRL IAWGAKQGTP RYEEAVHEID CC ATVAKRADLR RRYWMIEEGI IRGIEFARSP IPTEDETKAL QGNDASARKE AIDKIRTRYS CC KFANKDYSAE VDKKVAVAML TEYLKEIPYE NLPLHLRLVK DRFAGDVQAY VDDIFARSVF CC GSEAQFDAFA AVPSVEKLAE DPMVLFASSV FDEYRKLYNE LRPYDDPILR AQRTYIAGLL CC EMDGDQDQFP DANLTLRFTY GQVKGYSPRD NVYYGHQTTL DGVMEKEDPD NWEFVVDPKL CC KAVYERKDFG RYADRSGRMP VAFCATTHTT GGNSGSPVMN ANGELIGLNF DRNWEGVGGD CC IQYLADYQRS IIVDIRYVLL VIDKVGGCQR LLDEMNIVP CC !---- CC ALIGNMENT OF SEQRES AND ATOMRES CC SEQRES MKKRLLLPLFAALCLSQIAHADEGMWLMQQLGRKYAQMKERGLKMKEYDL CC ATOM ---------------------DEGMWLMQQLGRKYAQMKERGLKMKEYDL CC ***************************** CC SEQRES YNPNGTSLKDAVVLFDGGCTGEVVSDRGLVLTNHHCGYDMIQAHSTLEHN CC ATOM YNPNGTSLKDAVVLFDGGCTGEVVSDRGLVLTNHHCGYDMIQAHSTLEHN CC ************************************************** CC SEQRES YLENGFWAMREADELPNKDISVVFIDKIEDVTDYVKKELKAIKDPNSMDY CC ATOM YLENGFWAMREADELPNKDISVVFIDKIEDVTDYVKKELKAIKDPNSMDY CC ************************************************** CC SEQRES LSPKYLQKLADKKAGKNFSAKNPGLSVEIKAFYGGNLYLMFTKKTYTDVR CC ATOM LSPKYLQKLADKKAGKNFSAKNPGLSVEIKAFYGGNLYLMFTKKTYTDVR CC ************************************************** CC SEQRES LVGAPPSSIGKFGADTDNWIWPRHTGDFSIFRIYADKNGNPAPYSEDNVP CC ATOM LVGAPPSSIGKFGADTDNWIWPRHTGDFSIFRIYADKNGNPAPYSEDNVP CC ************************************************** CC SEQRES LKPKRFFNISLGGVQENDYAMIMGFPGTTHRYFTASEVDEWKSIDNDIRI CC ATOM LKPKRFFNISLGGVQENDYAMIMGFPGTTHRYFTASEVDEWKSIDNDIRI CC ************************************************** CC SEQRES RMRDIRQGVMLREMLADPQIKIMYSAKYAASQNAYKRAIGANWAIKTRGL CC ATOM RMRDIRQGVMLREMLADPQIKIMYSAKYAASQNAYKRAIGANWAIKTRGL CC ************************************************** CC SEQRES RQNKQAMQDRLIAWGAKQGTPRYEEAVHEIDATVAKRADLRRRYWMIEEG CC ATOM RQNKQAMQDRLIAWGAKQGTPRYEEAVHEIDATVAKRADLRRRYWMIEEG CC ************************************************** CC SEQRES IIRGIEFARSPIPTEDETKALQGNDASARKEAIDKIRTRYSKFANKDYSA CC ATOM IIRGIEFARSPIPTEDETKALQGNDASARKEAIDKIRTRYSKFANKDYSA CC ************************************************** CC SEQRES EVDKKVAVAMLTEYLKEIPYENLPLHLRLVKDRFAGDVQAYVDDIFARSV CC ATOM EVDKKVAVAMLTEYLKEIPYENLPLHLRLVKDRFAGDVQAYVDDIFARSV CC ************************************************** CC SEQRES FGSEAQFDAFAAVPSVEKLAEDPMVLFASSVFDEYRKLYNELRPYDDPIL CC ATOM FGSEAQFDAFAAVPSVEKLAEDPMVLFASSVFDEYRKLYNELRPYDDPIL CC ************************************************** CC SEQRES RAQRTYIAGLLEMDGDQDQFPDANLTLRFTYGQVKGYSPRDNVYYGHQTT CC ATOM RAQRTYIAGLLEMDGDQDQFPDANLTLRFTYGQVKGYSPRDNVYYGHQTT CC ************************************************** CC SEQRES LDGVMEKEDPDNWEFVVDPKLKAVYERKDFGRYADRSGRMPVAFCATTHT CC ATOM LDGVMEKEDPDNWEFVVDPKLKAVYERKDFGRYADRSGRMPVAFCATTHT CC ************************************************** CC SEQRES TGGNSGSPVMNANGELIGLNFDRNWEGVGGDIQYLADYQRSIIVDIRYVL CC ATOM TGGNSGSPVMNANGELIGLNFDRNWEGVGGDIQYLADYQRSIIVDIRYVL CC ************************************************** CC SEQRES LVIDKVGGCQRLLDEMNIVP CC ATOM LVIDKVGGCQRLLDEMNIVP CC ******************** SQ SEQUENCE 720 AA; MW; CN; MKKRLLLPLF AALCLSQIAH ADEGMWLMQQ LGRKYAQMKE RGLKMKEYDL YNPNGTSLKD AVVLFDGGCT GEVVSDRGLV LTNHHCGYDM IQAHSTLEHN YLENGFWAMR EADELPNKDI SVVFIDKIED VTDYVKKELK AIKDPNSMDY LSPKYLQKLA DKKAGKNFSA KNPGLSVEIK AFYGGNLYLM FTKKTYTDVR LVGAPPSSIG KFGADTDNWI WPRHTGDFSI FRIYADKNGN PAPYSEDNVP LKPKRFFNIS LGGVQENDYA MIMGFPGTTH RYFTASEVDE WKSIDNDIRI RMRDIRQGVM LREMLADPQI KIMYSAKYAA SQNAYKRAIG ANWAIKTRGL RQNKQAMQDR LIAWGAKQGT PRYEEAVHEI DATVAKRADL RRRYWMIEEG IIRGIEFARS PIPTEDETKA LQGNDASARK EAIDKIRTRY SKFANKDYSA EVDKKVAVAM LTEYLKEIPY ENLPLHLRLV KDRFAGDVQA YVDDIFARSV FGSEAQFDAF AAVPSVEKLA EDPMVLFASS VFDEYRKLYN ELRPYDDPIL RAQRTYIAGL LEMDGDQDQF PDANLTLRFT YGQVKGYSPR DNVYYGHQTT LDGVMEKEDP DNWEFVVDPK LKAVYERKDF GRYADRSGRM PVAFCATTHT TGGNSGSPVM NANGELIGLN FDRNWEGVGG DIQYLADYQR SIIVDIRYVL LVIDKVGGCQ RLLDEMNIVP //