ID 4DKUA STANDARD; PRT; 353 AA. DT CONVERTED FROM PDB (SEQRES) 4DKU DE HIV-1 gp120 core OS Human immunodeficiency virus 1 CC EXPDTA X-RAY DIFFRACTION CC RESOLU 2.490 CC R-Factor 0.203 FT #SUB 161 277 LEU A 16 59 LYS B Protein S 1 FT #SUB 162 278 THR A 16 59 LYS B Protein S 2 FT #SUB 162 278 THR A 19 62 GLU B Protein S 2 FT #SUB 222 354 ASN A 95 211 ASP B Protein S 4 FT #SUB 222 354 ASN A 96 212 PRO B Protein S 4 FT #SUB 222 354 ASN A 97 213 ILE B Protein S 2 FT #SUB 222 354 ASN A 98 214 PRO B Protein S 1 FT #SUB 222 354 ASN A 136 252 LYS B Protein A 8 FT #SUB 322 461 ASN A 246 379 ARG B Protein B 1 FT #SUB 323 462 ASN A 246 379 ARG B Protein A 9 FT #SUB 323 462 ASN A 300 439 ILE B Protein S 3 FT #SUB 323 462 ASN A 303 442 LYS B Protein A 2 FT #SUB 323 462 ASN A 304 443 ILE B Protein B 2 FT #SUB 323 462 ASN A 305 444 ASN B Protein B 5 FT #SUB 324 463 THR A 246 379 ARG B Protein B 3 FT #SUB 324 463 THR A 305 444 ASN B Protein B 2 FT #SUB 325 464 SER A 246 379 ARG B Protein A 3 FT #SUB 325 464 SER A 305 444 ASN B Protein A 4 FT #SUB 325 464 SER A 306 445 CYS B Protein S 2 FT #SUB 325 464 SER A 307 446 VAL B Protein S 8 FT #HET 9 52 LEU A 11 511 EPE A A 5 FT #HET 11 54 CYS A 11 511 EPE A S 1 FT #HET 29 72 HIS A 11 511 EPE A B 1 FT #HET 30 73 ALA A 11 511 EPE A B 3 FT #HET 60 103 GLN A 11 511 EPE A A 9 FT #HET 64 107 ASP A 11 511 EPE A S 11 FT #HET 95 211 ASP A 3 503 NAG A S 1 FT #HET 96 212 PRO A 3 503 NAG A S 1 FT #HET 101 217 TYR A 11 511 EPE A S 2 FT #HET 120 236 THR A 1 501 NAG A A 6 FT #HET 122 238 PRO A 1 501 NAG A S 1 FT #HET 124 240 LYS A 2 502 NAG A S 3 FT #HET 139 255 VAL A 12 512 0KU A S 2 FT #HET 140 256 SER A 12 512 0KU A B 3 FT #HET 141 257 THR A 12 512 0KU A A 5 FT #HET 145 261 LEU A 3 503 NAG A S 1 FT #HET 146 262 ASN A 10 510 NAG A S 1 FT #HET 153 269 GLU A 5 505 NAG A A 7 FT #HET 154 270 ILE A 5 505 NAG A A 9 FT #HET 156 272 ILE A 1 501 NAG A B 1 FT #HET 158 274 SER A 1 501 NAG A B 2 FT #HET 162 278 THR A 4 504 NAG A A 8 FT #HET 163 279 ASN A 4 504 NAG A A 5 FT #HET 175 291 SER A 10 510 NAG A S 4 FT #HET 198 330 TYR A 6 506 NAG A S 3 FT #HET 200 332 GLU A 6 506 NAG A S 9 FT #HET 203 335 GLY A 7 507 NAG A B 1 FT #HET 204 336 THR A 7 507 NAG A S 1 FT #HET 205 337 LYS A 7 507 NAG A S 5 FT #HET 212 344 GLN A 5 505 NAG A S 1 FT #HET 216 348 LYS A 5 505 NAG A S 1 FT #HET 220 352 HIS A 1 501 NAG A S 2 FT #HET 222 354 ASN A 8 508 NAG A A 3 FT #HET 222 354 ASN A 15 503 NAG B B 3 FT #HET 223 355 ASN A 15 503 NAG B B 4 FT #HET 223 355 ASN A 21 509 NAG B A 10 FT #HET 224 357 LYS A 15 503 NAG B A 4 FT #HET 237 370 GLU A 12 512 0KU A S 10 FT #HET 238 371 ILE A 12 512 0KU A S 9 FT #HET 239 372 THR A 9 509 NAG A S 1 FT #HET 240 373 MET A 9 509 NAG A S 1 FT #HET 242 375 SER A 12 512 0KU A A 9 FT #HET 243 376 PHE A 12 512 0KU A B 3 FT #HET 244 377 ASN A 3 503 NAG A B 1 FT #HET 244 377 ASN A 12 512 0KU A B 1 FT #HET 246 379 ARG A 3 503 NAG A S 2 FT #HET 249 382 PHE A 12 512 0KU A S 5 FT #HET 255 388 THR A 9 509 NAG A S 3 FT #HET 273 412 GLY A 7 507 NAG A B 1 FT #HET 274 413 THR A 7 507 NAG A A 3 FT #HET 285 424 ILE A 12 512 0KU A S 4 FT #HET 286 425 ASN A 12 512 0KU A A 10 FT #HET 287 426 MET A 12 512 0KU A B 5 FT #HET 288 427 TRP A 12 512 0KU A A 17 FT #HET 289 428 GLN A 12 512 0KU A B 2 FT #HET 290 429 GLY A 12 512 0KU A B 16 FT #HET 306 445 CYS A 3 503 NAG A S 1 FT #HET 307 446 VAL A 3 503 NAG A B 5 FT #HET 308 447 SER A 3 503 NAG A A 9 FT #HET 325 464 SER A 15 503 NAG B A 4 FT #HET 333 472 GLY A 12 512 0KU A B 5 FT #HET 334 473 GLY A 12 512 0KU A B 21 FT #HET 335 474 ASN A 12 512 0KU A B 1 FT #MOD 118 234 ASN A 1 501 NAG A S FT #MOD 125 241 ASN A 2 502 NAG A S FT #MOD 146 262 ASN A 3 503 NAG A S FT #MOD 160 276 ASN A 4 504 NAG A S FT #MOD 173 289 ASN A 5 505 NAG A S FT #MOD 179 295 ASN A 6 506 NAG A S FT #MOD 202 334 ASN A 7 507 NAG A S FT #MOD 223 355 ASN A 8 508 NAG A S FT #MOD 253 386 ASN A 9 509 NAG A S FT #MOD 309 448 ASN A 10 510 NAG A S FT DISORDER 186 191 FT DISORDER 264 271 CC SEQUENCE 339 AA (ATOM); CC VWKDADTTLF CASDAKAHET EVHNVWATHA CVPTDPNPQE IHLENVTENF NMWKNNMVEQ CC MQEDVISLWD QSLQPCVKLT GGSVIKQACP KISFDPIPIH YCTPAGYVIL KCNDKNFNGT CC GPCKNVSSVQ CTHGIKPVVS TQLLLNGSLA EEEIIIRSEN LTNNAKTIIV HLNKSVEINC CC TRPSNGDIRK AYCEINGTKW NKVLKQVTEK LKEHFNNKTI IFQPPSGGDL EITMHSFNCR CC GEFFYCNTTQ LFNNTCINGT ITLPCKIKQI INMWQGTGQA MYAPPIDGKI NCVSNITGIL CC LTRDGGANNT SNETFRPGGG NIKDNWRSEL YKYKVVQIE CC !---- CC ALIGNMENT OF SEQRES AND ATOMRES CC SEQRES VWKDADTTLFCASDAKAHETEVHNVWATHACVPTDPNPQEIHLENVTENF CC ATOM VWKDADTTLFCASDAKAHETEVHNVWATHACVPTDPNPQEIHLENVTENF CC ************************************************** CC SEQRES NMWKNNMVEQMQEDVISLWDQSLQPCVKLTGGSVIKQACPKISFDPIPIH CC ATOM NMWKNNMVEQMQEDVISLWDQSLQPCVKLTGGSVIKQACPKISFDPIPIH CC ************************************************** CC SEQRES YCTPAGYVILKCNDKNFNGTGPCKNVSSVQCTHGIKPVVSTQLLLNGSLA CC ATOM YCTPAGYVILKCNDKNFNGTGPCKNVSSVQCTHGIKPVVSTQLLLNGSLA CC ************************************************** CC SEQRES EEEIIIRSENLTNNAKTIIVHLNKSVEINCTRPSNGGSGSGGDIRKAYCE CC ATOM EEEIIIRSENLTNNAKTIIVHLNKSVEINCTRPSN------GDIRKAYCE CC *********************************** ********* CC SEQRES INGTKWNKVLKQVTEKLKEHFNNKTIIFQPPSGGDLEITMHSFNCRGEFF CC ATOM INGTKWNKVLKQVTEKLKEHFNNKTIIFQPPSGGDLEITMHSFNCRGEFF CC ************************************************** CC SEQRES YCNTTQLFNNTCIGNETMKGCNGTITLPCKIKQIINMWQGTGQAMYAPPI CC ATOM YCNTTQLFNNTCI--------NGTITLPCKIKQIINMWQGTGQAMYAPPI CC ************* ***************************** CC SEQRES DGKINCVSNITGILLTRDGGANNTSNETFRPGGGNIKDNWRSELYKYKVV CC ATOM DGKINCVSNITGILLTRDGGANNTSNETFRPGGGNIKDNWRSELYKYKVV CC ************************************************** CC SEQRES QIE CC ATOM QIE CC *** SQ SEQUENCE 353 AA; MW; CN; VWKDADTTLF CASDAKAHET EVHNVWATHA CVPTDPNPQE IHLENVTENF NMWKNNMVEQ MQEDVISLWD QSLQPCVKLT GGSVIKQACP KISFDPIPIH YCTPAGYVIL KCNDKNFNGT GPCKNVSSVQ CTHGIKPVVS TQLLLNGSLA EEEIIIRSEN LTNNAKTIIV HLNKSVEINC TRPSNGGSGS GGDIRKAYCE INGTKWNKVL KQVTEKLKEH FNNKTIIFQP PSGGDLEITM HSFNCRGEFF YCNTTQLFNN TCIGNETMKG CNGTITLPCK IKQIINMWQG TGQAMYAPPI DGKINCVSNI TGILLTRDGG ANNTSNETFR PGGGNIKDNW RSELYKYKVV QIE // ID 4DKUB STANDARD; PRT; 353 AA. DT CONVERTED FROM PDB (SEQRES) 4DKU DE HIV-1 gp120 core OS Human immunodeficiency virus 1 CC EXPDTA X-RAY DIFFRACTION CC RESOLU 2.490 CC R-Factor 0.203 FT #SUB 16 59 LYS B 161 277 LEU A Protein S 1 FT #SUB 16 59 LYS B 162 278 THR A Protein S 2 FT #SUB 19 62 GLU B 162 278 THR A Protein S 2 FT #SUB 95 211 ASP B 222 354 ASN A Protein S 4 FT #SUB 96 212 PRO B 222 354 ASN A Protein B 4 FT #SUB 97 213 ILE B 222 354 ASN A Protein A 2 FT #SUB 98 214 PRO B 222 354 ASN A Protein S 1 FT #SUB 136 252 LYS B 222 354 ASN A Protein S 8 FT #SUB 246 379 ARG B 322 461 ASN A Protein S 1 FT #SUB 246 379 ARG B 323 462 ASN A Protein S 9 FT #SUB 246 379 ARG B 324 463 THR A Protein S 3 FT #SUB 246 379 ARG B 325 464 SER A Protein S 3 FT #SUB 300 439 ILE B 323 462 ASN A Protein S 3 FT #SUB 303 442 LYS B 323 462 ASN A Protein B 2 FT #SUB 304 443 ILE B 323 462 ASN A Protein B 2 FT #SUB 305 444 ASN B 323 462 ASN A Protein B 5 FT #SUB 305 444 ASN B 324 463 THR A Protein B 2 FT #SUB 305 444 ASN B 325 464 SER A Protein A 4 FT #SUB 306 445 CYS B 325 464 SER A Protein B 2 FT #SUB 307 446 VAL B 325 464 SER A Protein A 8 FT #HET 9 52 LEU B 22 510 EPE B A 7 FT #HET 11 54 CYS B 22 510 EPE B S 1 FT #HET 18 61 HIS B 4 504 NAG A S 3 FT #HET 29 72 HIS B 22 510 EPE B B 1 FT #HET 30 73 ALA B 22 510 EPE B B 3 FT #HET 42 85 HIS B 14 502 NAG B S 3 FT #HET 60 103 GLN B 22 510 EPE B A 8 FT #HET 64 107 ASP B 22 510 EPE B S 9 FT #HET 98 214 PRO B 8 508 NAG A S 5 FT #HET 101 217 TYR B 22 510 EPE B S 1 FT #HET 113 229 ASN B 14 502 NAG B A 4 FT #HET 120 236 THR B 13 501 NAG B B 4 FT #HET 122 238 PRO B 13 501 NAG B S 4 FT #HET 136 252 LYS B 15 503 NAG B S 1 FT #HET 139 255 VAL B 23 511 0KU B A 2 FT #HET 140 256 SER B 23 511 0KU B B 2 FT #HET 141 257 THR B 23 511 0KU B A 5 FT #HET 145 261 LEU B 15 503 NAG B S 1 FT #HET 147 263 GLY B 8 508 NAG A B 1 FT #HET 152 268 GLU B 17 505 NAG B B 2 FT #HET 153 269 GLU B 17 505 NAG B A 5 FT #HET 154 270 ILE B 17 505 NAG B A 6 FT #HET 162 278 THR B 16 504 NAG B A 8 FT #HET 163 279 ASN B 16 504 NAG B A 9 FT #HET 175 291 SER B 21 509 NAG B S 3 FT #HET 198 330 TYR B 18 506 NAG B S 3 FT #HET 200 332 GLU B 18 506 NAG B S 5 FT #HET 203 335 GLY B 19 507 NAG B B 1 FT #HET 205 337 LYS B 19 507 NAG B S 3 FT #HET 212 344 GLN B 17 505 NAG B S 5 FT #HET 216 348 LYS B 17 505 NAG B S 3 FT #HET 237 370 GLU B 23 511 0KU B S 11 FT #HET 238 371 ILE B 23 511 0KU B S 17 FT #HET 242 375 SER B 23 511 0KU B A 6 FT #HET 243 376 PHE B 23 511 0KU B B 2 FT #HET 246 379 ARG B 15 503 NAG B S 4 FT #HET 249 382 PHE B 23 511 0KU B S 2 FT #HET 255 388 THR B 20 508 NAG B S 5 FT #HET 273 412 GLY B 19 507 NAG B B 2 FT #HET 274 413 THR B 19 507 NAG B A 4 FT #HET 285 424 ILE B 23 511 0KU B S 2 FT #HET 286 425 ASN B 23 511 0KU B B 8 FT #HET 287 426 MET B 23 511 0KU B B 4 FT #HET 288 427 TRP B 23 511 0KU B A 13 FT #HET 289 428 GLN B 23 511 0KU B B 2 FT #HET 290 429 GLY B 23 511 0KU B B 11 FT #HET 306 445 CYS B 15 503 NAG B S 2 FT #HET 307 446 VAL B 15 503 NAG B B 6 FT #HET 308 447 SER B 15 503 NAG B S 7 FT #HET 333 472 GLY B 23 511 0KU B B 5 FT #HET 334 473 GLY B 23 511 0KU B B 19 FT #HET 335 474 ASN B 23 511 0KU B B 1 FT #HET 336 475 ILE B 23 511 0KU B S 2 FT #MOD 118 234 ASN B 13 501 NAG B S FT #MOD 125 241 ASN B 14 502 NAG B S FT #MOD 146 262 ASN B 15 503 NAG B S FT #MOD 160 276 ASN B 16 504 NAG B S FT #MOD 173 289 ASN B 17 505 NAG B S FT #MOD 179 295 ASN B 18 506 NAG B S FT #MOD 202 334 ASN B 19 507 NAG B S FT #MOD 253 386 ASN B 20 508 NAG B S FT #MOD 309 448 ASN B 21 509 NAG B S FT DISORDER 186 191 FT DISORDER 264 271 CC SEQUENCE 339 AA (ATOM); CC VWKDADTTLF CASDAKAHET EVHNVWATHA CVPTDPNPQE IHLENVTENF NMWKNNMVEQ CC MQEDVISLWD QSLQPCVKLT GGSVIKQACP KISFDPIPIH YCTPAGYVIL KCNDKNFNGT CC GPCKNVSSVQ CTHGIKPVVS TQLLLNGSLA EEEIIIRSEN LTNNAKTIIV HLNKSVEINC CC TRPSNGDIRK AYCEINGTKW NKVLKQVTEK LKEHFNNKTI IFQPPSGGDL EITMHSFNCR CC GEFFYCNTTQ LFNNTCINGT ITLPCKIKQI INMWQGTGQA MYAPPIDGKI NCVSNITGIL CC LTRDGGANNT SNETFRPGGG NIKDNWRSEL YKYKVVQIE CC !---- CC ALIGNMENT OF SEQRES AND ATOMRES CC SEQRES VWKDADTTLFCASDAKAHETEVHNVWATHACVPTDPNPQEIHLENVTENF CC ATOM VWKDADTTLFCASDAKAHETEVHNVWATHACVPTDPNPQEIHLENVTENF CC ************************************************** CC SEQRES NMWKNNMVEQMQEDVISLWDQSLQPCVKLTGGSVIKQACPKISFDPIPIH CC ATOM NMWKNNMVEQMQEDVISLWDQSLQPCVKLTGGSVIKQACPKISFDPIPIH CC ************************************************** CC SEQRES YCTPAGYVILKCNDKNFNGTGPCKNVSSVQCTHGIKPVVSTQLLLNGSLA CC ATOM YCTPAGYVILKCNDKNFNGTGPCKNVSSVQCTHGIKPVVSTQLLLNGSLA CC ************************************************** CC SEQRES EEEIIIRSENLTNNAKTIIVHLNKSVEINCTRPSNGGSGSGGDIRKAYCE CC ATOM EEEIIIRSENLTNNAKTIIVHLNKSVEINCTRPSN------GDIRKAYCE CC *********************************** ********* CC SEQRES INGTKWNKVLKQVTEKLKEHFNNKTIIFQPPSGGDLEITMHSFNCRGEFF CC ATOM INGTKWNKVLKQVTEKLKEHFNNKTIIFQPPSGGDLEITMHSFNCRGEFF CC ************************************************** CC SEQRES YCNTTQLFNNTCIGNETMKGCNGTITLPCKIKQIINMWQGTGQAMYAPPI CC ATOM YCNTTQLFNNTCI--------NGTITLPCKIKQIINMWQGTGQAMYAPPI CC ************* ***************************** CC SEQRES DGKINCVSNITGILLTRDGGANNTSNETFRPGGGNIKDNWRSELYKYKVV CC ATOM DGKINCVSNITGILLTRDGGANNTSNETFRPGGGNIKDNWRSELYKYKVV CC ************************************************** CC SEQRES QIE CC ATOM QIE CC *** SQ SEQUENCE 353 AA; MW; CN; VWKDADTTLF CASDAKAHET EVHNVWATHA CVPTDPNPQE IHLENVTENF NMWKNNMVEQ MQEDVISLWD QSLQPCVKLT GGSVIKQACP KISFDPIPIH YCTPAGYVIL KCNDKNFNGT GPCKNVSSVQ CTHGIKPVVS TQLLLNGSLA EEEIIIRSEN LTNNAKTIIV HLNKSVEINC TRPSNGGSGS GGDIRKAYCE INGTKWNKVL KQVTEKLKEH FNNKTIIFQP PSGGDLEITM HSFNCRGEFF YCNTTQLFNN TCIGNETMKG CNGTITLPCK IKQIINMWQG TGQAMYAPPI DGKINCVSNI TGILLTRDGG ANNTSNETFR PGGGNIKDNW RSELYKYKVV QIE //