ID 3DH3A STANDARD; PRT; 290 AA. DT CONVERTED FROM PDB (SEQRES) 3DH3 DE Ribosomal large subunit pseudouridine synthase F OS Escherichia coli CC EXPDTA X-RAY DIFFRACTION CC RESOLU 3.000 CC R-Factor 0.234 FT #SUB 8 8 ARG A 9 2595 G E DNA/RNA S 9 FT #SUB 8 8 ARG A 10 2596 U E DNA/RNA S 6 FT #SUB 8 8 ARG A 11 2597 G E DNA/RNA S 6 FT #SUB 10 10 ASN A 9 2595 G E DNA/RNA S 1 FT #SUB 10 10 ASN A 11 2597 G E DNA/RNA S 1 FT #SUB 11 11 LYS A 7 2593 U E DNA/RNA S 6 FT #SUB 11 11 LYS A 8 2594 C E DNA/RNA S 4 FT #SUB 14 14 SER A 6 2592 G E DNA/RNA S 1 FT #SUB 20 20 SER A 5 2591 C E DNA/RNA S 9 FT #SUB 20 20 SER A 6 2592 G E DNA/RNA A 8 FT #SUB 21 21 ARG A 6 2592 G E DNA/RNA A 5 FT #SUB 21 21 ARG A 7 2593 U E DNA/RNA S 7 FT #SUB 21 21 ARG A 8 2594 C E DNA/RNA S 5 FT #SUB 21 21 ARG A 9 2595 G E DNA/RNA S 6 FT #SUB 22 22 ARG A 5 2591 C E DNA/RNA S 7 FT #SUB 22 22 ARG A 6 2592 G E DNA/RNA S 6 FT #SUB 22 22 ARG A 7 2593 U E DNA/RNA S 4 FT #SUB 22 22 ARG A 14 2600 A E DNA/RNA S 1 FT #SUB 23 23 GLU A 5 2591 C E DNA/RNA S 2 FT #SUB 25 25 ASP A 11 2597 G E DNA/RNA S 5 FT #SUB 42 42 ILE A 10 2596 U E DNA/RNA B 1 FT #SUB 42 42 ILE A 11 2597 G E DNA/RNA S 6 FT #SUB 43 43 GLY A 10 2596 U E DNA/RNA B 2 FT #SUB 43 43 GLY A 11 2597 G E DNA/RNA B 1 FT #SUB 44 44 ASP A 10 2596 U E DNA/RNA B 1 FT #SUB 79 79 VAL A 19 2605 U E DNA/RNA S 1 FT #SUB 82 82 THR A 4 2590 A E DNA/RNA A 6 FT #SUB 82 82 THR A 5 2591 C E DNA/RNA S 9 FT #SUB 83 83 GLU A 3 2589 A E DNA/RNA S 3 FT #SUB 83 83 GLU A 4 2590 A E DNA/RNA A 5 FT #SUB 86 86 GLU A 20 2606 C E DNA/RNA S 1 FT #SUB 99 99 ARG A 5 2591 C E DNA/RNA S 3 FT #SUB 99 99 ARG A 6 2592 G E DNA/RNA S 5 FT #SUB 101 101 PHE A 5 2591 C E DNA/RNA S 2 FT #SUB 101 101 PHE A 6 2592 G E DNA/RNA S 4 FT #SUB 104 104 GLY A 17 2603 G E DNA/RNA B 3 FT #SUB 104 104 GLY A 18 2604 FHU E DNA/RNA B 1 FT #SUB 105 105 ARG A 3 2589 A E DNA/RNA S 1 FT #SUB 105 105 ARG A 4 2590 A E DNA/RNA S 2 FT #SUB 105 105 ARG A 17 2603 G E DNA/RNA A 25 FT #SUB 105 105 ARG A 18 2604 FHU E DNA/RNA B 6 FT #SUB 105 105 ARG A 19 2605 U E DNA/RNA A 31 FT #SUB 106 106 LEU A 18 2604 FHU E DNA/RNA A 3 FT #SUB 107 107 ASP A 18 2604 FHU E DNA/RNA A 15 FT #SUB 107 107 ASP A 19 2605 U E DNA/RNA A 4 FT #SUB 107 107 ASP A 20 2606 C E DNA/RNA A 3 FT #SUB 108 108 LYS A 19 2605 U E DNA/RNA B 1 FT #SUB 108 108 LYS A 20 2606 C E DNA/RNA A 9 FT #SUB 108 108 LYS A 21 2607 G E DNA/RNA S 6 FT #SUB 109 109 ASP A 20 2606 C E DNA/RNA S 1 FT #SUB 110 110 SER A 18 2604 FHU E DNA/RNA S 3 FT #SUB 120 120 GLY A 6 2592 G E DNA/RNA B 7 FT #SUB 120 120 GLY A 7 2593 U E DNA/RNA B 6 FT #SUB 123 123 VAL A 6 2592 G E DNA/RNA S 3 FT #SUB 124 124 ASN A 6 2592 G E DNA/RNA S 10 FT #SUB 124 124 ASN A 7 2593 U E DNA/RNA S 3 FT #SUB 124 124 ASN A 16 2602 A E DNA/RNA S 1 FT #SUB 127 127 LEU A 17 2603 G E DNA/RNA S 6 FT #SUB 128 128 ARG A 6 2592 G E DNA/RNA S 1 FT #SUB 128 128 ARG A 15 2601 C E DNA/RNA S 6 FT #SUB 128 128 ARG A 16 2602 A E DNA/RNA A 7 FT #SUB 135 135 LYS A 18 2604 FHU E DNA/RNA S 2 FT #SUB 137 137 TYR A 18 2604 FHU E DNA/RNA S 12 FT #SUB 183 183 GLN A 17 2603 G E DNA/RNA S 1 FT #SUB 183 183 GLN A 18 2604 FHU E DNA/RNA B 2 FT #SUB 184 184 GLY A 17 2603 G E DNA/RNA B 16 FT #SUB 184 184 GLY A 18 2604 FHU E DNA/RNA B 5 FT #SUB 185 185 LEU A 17 2603 G E DNA/RNA A 3 FT #SUB 185 185 LEU A 18 2604 FHU E DNA/RNA B 3 FT #SUB 186 186 ASN A 18 2604 FHU E DNA/RNA B 2 FT #SUB 186 186 ASN A 19 2605 U E DNA/RNA A 8 FT #SUB 187 187 ARG A 18 2604 FHU E DNA/RNA A 13 FT #SUB 187 187 ARG A 20 2606 C E DNA/RNA S 5 FT #SUB 188 188 GLN A 18 2604 FHU E DNA/RNA A 5 FT #SUB 189 189 ILE A 18 2604 FHU E DNA/RNA A 10 FT #SUB 190 190 ARG A 18 2604 FHU E DNA/RNA A 2 FT #SUB 203 203 LEU A 18 2604 FHU E DNA/RNA S 3 FT #SUB 205 205 ARG A 18 2604 FHU E DNA/RNA S 2 FT #SUB 240 240 SER A 7 2593 U E DNA/RNA A 3 FT #SUB 241 241 SER A 7 2593 U E DNA/RNA S 1 FT #SUB 241 241 SER A 8 2594 C E DNA/RNA S 1 FT #SUB 242 242 GLU A 15 2601 C E DNA/RNA S 3 FT #SUB 30 30 GLN A 84 84 ASP B Protein S 4 FT #SUB 84 84 ASP A 30 30 GLN B Protein S 1 FT #SUB 88 88 ASP A 38 38 LYS D Protein S 2 FT #SUB 93 93 PHE A 36 36 ASN D Protein S 1 FT #SUB 93 93 PHE A 38 38 LYS D Protein S 1 FT #SUB 218 218 LEU A 36 36 ASN D Protein S 1 FT #SUB 218 218 LEU A 51 51 VAL D Protein A 2 FT #SUB 219 219 GLY A 37 37 GLY D Protein B 1 FT #SUB 220 220 GLU A 53 53 LYS D Protein S 9 FT DISORDER 1 3 FT DISORDER 244 290 CC SEQUENCE 240 AA (ATOM); CC DSSVRLNKYI SESGICSRRE ADRYIEQGNV FLNGKRATIG DQVKPGDVVK VNGQLIEPRE CC AEDLVLIALN KPVGIVSTTE DGERDNIVDF VNHSKRVFPI GRLDKDSQGL IFLTNHGDLV CC NKILRAGNDH EKEYLVTVDK PITEEFIRGM SAGVPILGTV TKKCKVKKEA PFVFRITLVQ CC GLNRQIRRMC EHFGYEVKKL ERTRIMNVSL SGIPLGEWRD LTDDELIDLF KLIENSSSEV CC !---- CC ALIGNMENT OF SEQRES AND ATOMRES CC SEQRES MLPDSSVRLNKYISESGICSRREADRYIEQGNVFLNGKRATIGDQVKPGD CC ATOM ---DSSVRLNKYISESGICSRREADRYIEQGNVFLNGKRATIGDQVKPGD CC *********************************************** CC SEQRES VVKVNGQLIEPREAEDLVLIALNKPVGIVSTTEDGERDNIVDFVNHSKRV CC ATOM VVKVNGQLIEPREAEDLVLIALNKPVGIVSTTEDGERDNIVDFVNHSKRV CC ************************************************** CC SEQRES FPIGRLDKDSQGLIFLTNHGDLVNKILRAGNDHEKEYLVTVDKPITEEFI CC ATOM FPIGRLDKDSQGLIFLTNHGDLVNKILRAGNDHEKEYLVTVDKPITEEFI CC ************************************************** CC SEQRES RGMSAGVPILGTVTKKCKVKKEAPFVFRITLVQGLNRQIRRMCEHFGYEV CC ATOM RGMSAGVPILGTVTKKCKVKKEAPFVFRITLVQGLNRQIRRMCEHFGYEV CC ************************************************** CC SEQRES KKLERTRIMNVSLSGIPLGEWRDLTDDELIDLFKLIENSSSEVKPKAKAK CC ATOM KKLERTRIMNVSLSGIPLGEWRDLTDDELIDLFKLIENSSSEV------- CC ******************************************* CC SEQRES PKTAGIKRPVVKMEKTAEKGGRPASNGKRFTSPGRKKKGR CC ATOM ---------------------------------------- CC SQ SEQUENCE 290 AA; MW; CN; MLPDSSVRLN KYISESGICS RREADRYIEQ GNVFLNGKRA TIGDQVKPGD VVKVNGQLIE PREAEDLVLI ALNKPVGIVS TTEDGERDNI VDFVNHSKRV FPIGRLDKDS QGLIFLTNHG DLVNKILRAG NDHEKEYLVT VDKPITEEFI RGMSAGVPIL GTVTKKCKVK KEAPFVFRIT LVQGLNRQIR RMCEHFGYEV KKLERTRIMN VSLSGIPLGE WRDLTDDELI DLFKLIENSS SEVKPKAKAK PKTAGIKRPV VKMEKTAEKG GRPASNGKRF TSPGRKKKGR // ID 3DH3E STANDARD; PRT; 22 AA. DT CONVERTED FROM PDB (SEQRES) 3DH3 DE stem loop fragment of E. Coli 23S RNA OS syntetic CC EXPDTA X-RAY DIFFRACTION CC RESOLU 3.000 CC R-Factor 0.234 FT #SUB 3 2589 A E 83 83 GLU A Protein S 3 FT #SUB 3 2589 A E 105 105 ARG A Protein S 1 FT #SUB 4 2590 A E 82 82 THR A Protein S 6 FT #SUB 4 2590 A E 83 83 GLU A Protein S 5 FT #SUB 4 2590 A E 105 105 ARG A Protein S 2 FT #SUB 5 2591 C E 20 20 SER A Protein S 9 FT #SUB 5 2591 C E 22 22 ARG A Protein S 7 FT #SUB 5 2591 C E 23 23 GLU A Protein S 2 FT #SUB 5 2591 C E 82 82 THR A Protein S 9 FT #SUB 5 2591 C E 99 99 ARG A Protein S 3 FT #SUB 5 2591 C E 101 101 PHE A Protein S 2 FT #SUB 6 2592 G E 14 14 SER A Protein S 1 FT #SUB 6 2592 G E 20 20 SER A Protein S 8 FT #SUB 6 2592 G E 21 21 ARG A Protein S 5 FT #SUB 6 2592 G E 22 22 ARG A Protein S 6 FT #SUB 6 2592 G E 99 99 ARG A Protein S 5 FT #SUB 6 2592 G E 101 101 PHE A Protein S 4 FT #SUB 6 2592 G E 120 120 GLY A Protein S 7 FT #SUB 6 2592 G E 123 123 VAL A Protein S 3 FT #SUB 6 2592 G E 124 124 ASN A Protein S 10 FT #SUB 6 2592 G E 128 128 ARG A Protein S 1 FT #SUB 7 2593 U E 11 11 LYS A Protein S 6 FT #SUB 7 2593 U E 21 21 ARG A Protein S 7 FT #SUB 7 2593 U E 22 22 ARG A Protein S 4 FT #SUB 7 2593 U E 120 120 GLY A Protein S 6 FT #SUB 7 2593 U E 124 124 ASN A Protein S 3 FT #SUB 7 2593 U E 240 240 SER A Protein S 3 FT #SUB 7 2593 U E 241 241 SER A Protein S 1 FT #SUB 8 2594 C E 11 11 LYS A Protein S 4 FT #SUB 8 2594 C E 21 21 ARG A Protein S 5 FT #SUB 8 2594 C E 241 241 SER A Protein S 1 FT #SUB 9 2595 G E 8 8 ARG A Protein S 9 FT #SUB 9 2595 G E 10 10 ASN A Protein S 1 FT #SUB 9 2595 G E 21 21 ARG A Protein S 6 FT #SUB 10 2596 U E 8 8 ARG A Protein S 6 FT #SUB 10 2596 U E 42 42 ILE A Protein S 1 FT #SUB 10 2596 U E 43 43 GLY A Protein S 2 FT #SUB 10 2596 U E 44 44 ASP A Protein S 1 FT #SUB 11 2597 G E 8 8 ARG A Protein S 6 FT #SUB 11 2597 G E 10 10 ASN A Protein S 1 FT #SUB 11 2597 G E 25 25 ASP A Protein S 5 FT #SUB 11 2597 G E 42 42 ILE A Protein S 6 FT #SUB 11 2597 G E 43 43 GLY A Protein S 1 FT #SUB 14 2600 A E 22 22 ARG A Protein S 1 FT #SUB 15 2601 C E 128 128 ARG A Protein S 6 FT #SUB 15 2601 C E 242 242 GLU A Protein S 3 FT #SUB 16 2602 A E 124 124 ASN A Protein S 1 FT #SUB 16 2602 A E 128 128 ARG A Protein S 7 FT #SUB 17 2603 G E 104 104 GLY A Protein S 3 FT #SUB 17 2603 G E 105 105 ARG A Protein S 25 FT #SUB 17 2603 G E 127 127 LEU A Protein S 6 FT #SUB 17 2603 G E 183 183 GLN A Protein S 1 FT #SUB 17 2603 G E 184 184 GLY A Protein S 16 FT #SUB 17 2603 G E 185 185 LEU A Protein S 3 FT #SUB 18 2604 FHU E 104 104 GLY A Protein S 1 FT #SUB 18 2604 FHU E 105 105 ARG A Protein S 6 FT #SUB 18 2604 FHU E 106 106 LEU A Protein S 3 FT #SUB 18 2604 FHU E 107 107 ASP A Protein S 15 FT #SUB 18 2604 FHU E 110 110 SER A Protein S 3 FT #SUB 18 2604 FHU E 135 135 LYS A Protein S 2 FT #SUB 18 2604 FHU E 137 137 TYR A Protein S 12 FT #SUB 18 2604 FHU E 183 183 GLN A Protein S 2 FT #SUB 18 2604 FHU E 184 184 GLY A Protein S 5 FT #SUB 18 2604 FHU E 185 185 LEU A Protein S 3 FT #SUB 18 2604 FHU E 186 186 ASN A Protein S 2 FT #SUB 18 2604 FHU E 187 187 ARG A Protein S 13 FT #SUB 18 2604 FHU E 188 188 GLN A Protein S 5 FT #SUB 18 2604 FHU E 189 189 ILE A Protein S 10 FT #SUB 18 2604 FHU E 190 190 ARG A Protein S 2 FT #SUB 18 2604 FHU E 203 203 LEU A Protein S 3 FT #SUB 18 2604 FHU E 205 205 ARG A Protein S 2 FT #SUB 19 2605 U E 79 79 VAL A Protein S 1 FT #SUB 19 2605 U E 105 105 ARG A Protein S 31 FT #SUB 19 2605 U E 107 107 ASP A Protein S 4 FT #SUB 19 2605 U E 108 108 LYS A Protein S 1 FT #SUB 19 2605 U E 186 186 ASN A Protein S 8 FT #SUB 20 2606 C E 86 86 GLU A Protein S 1 FT #SUB 20 2606 C E 107 107 ASP A Protein S 3 FT #SUB 20 2606 C E 108 108 LYS A Protein S 9 FT #SUB 20 2606 C E 109 109 ASP A Protein S 1 FT #SUB 20 2606 C E 187 187 ARG A Protein S 5 FT #SUB 21 2607 G E 108 108 LYS A Protein S 6 FT #SUB 1 2587 A E 2 2588 G F DNA/RNA S 32 FT #SUB 2 2588 G E 1 2587 A F DNA/RNA S 30 FT #SUB 2 2588 G E 2 2588 G F DNA/RNA S 1 FT #SUB 2 2588 G E 20 2606 C F DNA/RNA S 13 FT #SUB 2 2588 G E 21 2607 G F DNA/RNA S 33 FT #SUB 20 2606 C E 2 2588 G F DNA/RNA S 15 FT #SUB 21 2607 G E 2 2588 G F DNA/RNA S 25 CC SEQUENCE 22 AA (ATOM); CC agaacgucgu gagacagXuc gg CC !---- CC ALIGNMENT OF SEQRES AND ATOMRES CC SEQRES agaacgucgugagacagXucgg CC ATOM agaacgucgugagacagXucgg CC ********************** SQ SEQUENCE 22 AA; MW; CN; agaacgucgu gagacagXuc gg // ID 3DH3B STANDARD; PRT; 290 AA. DT CONVERTED FROM PDB (SEQRES) 3DH3 DE Ribosomal large subunit pseudouridine synthase F OS Escherichia coli CC EXPDTA X-RAY DIFFRACTION CC RESOLU 3.000 CC R-Factor 0.234 FT #SUB 30 30 GLN B 84 84 ASP A Protein S 1 FT #SUB 84 84 ASP B 30 30 GLN A Protein S 4 FT #SUB 8 8 ARG B 9 2595 G F DNA/RNA S 17 FT #SUB 8 8 ARG B 10 2596 U F DNA/RNA S 6 FT #SUB 8 8 ARG B 11 2597 G F DNA/RNA S 6 FT #SUB 10 10 ASN B 9 2595 G F DNA/RNA S 2 FT #SUB 10 10 ASN B 11 2597 G F DNA/RNA S 3 FT #SUB 11 11 LYS B 7 2593 U F DNA/RNA S 5 FT #SUB 11 11 LYS B 8 2594 C F DNA/RNA S 5 FT #SUB 14 14 SER B 6 2592 G F DNA/RNA S 1 FT #SUB 20 20 SER B 5 2591 C F DNA/RNA S 9 FT #SUB 20 20 SER B 6 2592 G F DNA/RNA A 8 FT #SUB 21 21 ARG B 6 2592 G F DNA/RNA A 5 FT #SUB 21 21 ARG B 7 2593 U F DNA/RNA S 6 FT #SUB 21 21 ARG B 8 2594 C F DNA/RNA S 5 FT #SUB 21 21 ARG B 9 2595 G F DNA/RNA S 6 FT #SUB 22 22 ARG B 5 2591 C F DNA/RNA S 11 FT #SUB 22 22 ARG B 6 2592 G F DNA/RNA S 7 FT #SUB 22 22 ARG B 7 2593 U F DNA/RNA S 3 FT #SUB 22 22 ARG B 14 2600 A F DNA/RNA S 1 FT #SUB 23 23 GLU B 5 2591 C F DNA/RNA S 2 FT #SUB 25 25 ASP B 11 2597 G F DNA/RNA S 9 FT #SUB 42 42 ILE B 10 2596 U F DNA/RNA B 2 FT #SUB 42 42 ILE B 11 2597 G F DNA/RNA S 10 FT #SUB 43 43 GLY B 10 2596 U F DNA/RNA B 3 FT #SUB 43 43 GLY B 11 2597 G F DNA/RNA B 2 FT #SUB 44 44 ASP B 10 2596 U F DNA/RNA B 3 FT #SUB 79 79 VAL B 19 2605 U F DNA/RNA S 1 FT #SUB 82 82 THR B 4 2590 A F DNA/RNA A 4 FT #SUB 82 82 THR B 5 2591 C F DNA/RNA S 6 FT #SUB 83 83 GLU B 3 2589 A F DNA/RNA S 1 FT #SUB 83 83 GLU B 4 2590 A F DNA/RNA A 3 FT #SUB 99 99 ARG B 5 2591 C F DNA/RNA S 1 FT #SUB 99 99 ARG B 6 2592 G F DNA/RNA S 4 FT #SUB 101 101 PHE B 5 2591 C F DNA/RNA S 2 FT #SUB 101 101 PHE B 6 2592 G F DNA/RNA S 3 FT #SUB 104 104 GLY B 17 2603 G F DNA/RNA B 2 FT #SUB 104 104 GLY B 18 2604 FHU F DNA/RNA B 1 FT #SUB 105 105 ARG B 4 2590 A F DNA/RNA S 2 FT #SUB 105 105 ARG B 17 2603 G F DNA/RNA A 23 FT #SUB 105 105 ARG B 18 2604 FHU F DNA/RNA B 5 FT #SUB 105 105 ARG B 19 2605 U F DNA/RNA A 29 FT #SUB 106 106 LEU B 18 2604 FHU F DNA/RNA A 4 FT #SUB 107 107 ASP B 18 2604 FHU F DNA/RNA A 17 FT #SUB 107 107 ASP B 19 2605 U F DNA/RNA A 2 FT #SUB 107 107 ASP B 20 2606 C F DNA/RNA A 4 FT #SUB 108 108 LYS B 20 2606 C F DNA/RNA A 6 FT #SUB 108 108 LYS B 21 2607 G F DNA/RNA S 4 FT #SUB 109 109 ASP B 20 2606 C F DNA/RNA S 1 FT #SUB 110 110 SER B 18 2604 FHU F DNA/RNA S 3 FT #SUB 120 120 GLY B 6 2592 G F DNA/RNA B 6 FT #SUB 120 120 GLY B 7 2593 U F DNA/RNA B 5 FT #SUB 123 123 VAL B 6 2592 G F DNA/RNA S 3 FT #SUB 124 124 ASN B 6 2592 G F DNA/RNA S 11 FT #SUB 124 124 ASN B 7 2593 U F DNA/RNA S 2 FT #SUB 124 124 ASN B 16 2602 A F DNA/RNA S 2 FT #SUB 127 127 LEU B 17 2603 G F DNA/RNA S 4 FT #SUB 128 128 ARG B 6 2592 G F DNA/RNA S 1 FT #SUB 128 128 ARG B 15 2601 C F DNA/RNA S 7 FT #SUB 128 128 ARG B 16 2602 A F DNA/RNA A 6 FT #SUB 135 135 LYS B 18 2604 FHU F DNA/RNA S 1 FT #SUB 137 137 TYR B 18 2604 FHU F DNA/RNA S 7 FT #SUB 183 183 GLN B 17 2603 G F DNA/RNA S 1 FT #SUB 183 183 GLN B 18 2604 FHU F DNA/RNA B 1 FT #SUB 184 184 GLY B 17 2603 G F DNA/RNA B 15 FT #SUB 184 184 GLY B 18 2604 FHU F DNA/RNA B 10 FT #SUB 185 185 LEU B 17 2603 G F DNA/RNA A 3 FT #SUB 185 185 LEU B 18 2604 FHU F DNA/RNA B 5 FT #SUB 186 186 ASN B 18 2604 FHU F DNA/RNA B 3 FT #SUB 186 186 ASN B 19 2605 U F DNA/RNA A 8 FT #SUB 187 187 ARG B 18 2604 FHU F DNA/RNA A 14 FT #SUB 187 187 ARG B 20 2606 C F DNA/RNA S 5 FT #SUB 188 188 GLN B 18 2604 FHU F DNA/RNA B 4 FT #SUB 189 189 ILE B 18 2604 FHU F DNA/RNA A 11 FT #SUB 190 190 ARG B 18 2604 FHU F DNA/RNA A 3 FT #SUB 203 203 LEU B 18 2604 FHU F DNA/RNA S 3 FT #SUB 205 205 ARG B 18 2604 FHU F DNA/RNA S 2 FT #SUB 240 240 SER B 7 2593 U F DNA/RNA A 5 FT #SUB 241 241 SER B 7 2593 U F DNA/RNA S 1 FT #SUB 241 241 SER B 8 2594 C F DNA/RNA S 3 FT #SUB 36 36 ASN B 75 75 PRO C Protein S 2 FT #SUB 36 36 ASN B 93 93 PHE C Protein B 3 FT #SUB 36 36 ASN B 218 218 LEU C Protein S 3 FT #SUB 38 38 LYS B 88 88 ASP C Protein S 3 FT #SUB 49 49 GLY B 218 218 LEU C Protein B 2 FT #SUB 50 50 ASP B 218 218 LEU C Protein B 2 FT #SUB 51 51 VAL B 218 218 LEU C Protein S 7 FT #SUB 51 51 VAL B 219 219 GLY C Protein S 1 FT #SUB 53 53 LYS B 220 220 GLU C Protein S 8 FT #SUB 58 58 LEU B 217 217 PRO C Protein S 2 FT DISORDER 1 2 FT DISORDER 244 290 CC SEQUENCE 241 AA (ATOM); CC PDSSVRLNKY ISESGICSRR EADRYIEQGN VFLNGKRATI GDQVKPGDVV KVNGQLIEPR CC EAEDLVLIAL NKPVGIVSTT EDGERDNIVD FVNHSKRVFP IGRLDKDSQG LIFLTNHGDL CC VNKILRAGND HEKEYLVTVD KPITEEFIRG MSAGVPILGT VTKKCKVKKE APFVFRITLV CC QGLNRQIRRM CEHFGYEVKK LERTRIMNVS LSGIPLGEWR DLTDDELIDL FKLIENSSSE CC V CC !---- CC ALIGNMENT OF SEQRES AND ATOMRES CC SEQRES MLPDSSVRLNKYISESGICSRREADRYIEQGNVFLNGKRATIGDQVKPGD CC ATOM --PDSSVRLNKYISESGICSRREADRYIEQGNVFLNGKRATIGDQVKPGD CC ************************************************ CC SEQRES VVKVNGQLIEPREAEDLVLIALNKPVGIVSTTEDGERDNIVDFVNHSKRV CC ATOM VVKVNGQLIEPREAEDLVLIALNKPVGIVSTTEDGERDNIVDFVNHSKRV CC ************************************************** CC SEQRES FPIGRLDKDSQGLIFLTNHGDLVNKILRAGNDHEKEYLVTVDKPITEEFI CC ATOM FPIGRLDKDSQGLIFLTNHGDLVNKILRAGNDHEKEYLVTVDKPITEEFI CC ************************************************** CC SEQRES RGMSAGVPILGTVTKKCKVKKEAPFVFRITLVQGLNRQIRRMCEHFGYEV CC ATOM RGMSAGVPILGTVTKKCKVKKEAPFVFRITLVQGLNRQIRRMCEHFGYEV CC ************************************************** CC SEQRES KKLERTRIMNVSLSGIPLGEWRDLTDDELIDLFKLIENSSSEVKPKAKAK CC ATOM KKLERTRIMNVSLSGIPLGEWRDLTDDELIDLFKLIENSSSEV------- CC ******************************************* CC SEQRES PKTAGIKRPVVKMEKTAEKGGRPASNGKRFTSPGRKKKGR CC ATOM ---------------------------------------- CC SQ SEQUENCE 290 AA; MW; CN; MLPDSSVRLN KYISESGICS RREADRYIEQ GNVFLNGKRA TIGDQVKPGD VVKVNGQLIE PREAEDLVLI ALNKPVGIVS TTEDGERDNI VDFVNHSKRV FPIGRLDKDS QGLIFLTNHG DLVNKILRAG NDHEKEYLVT VDKPITEEFI RGMSAGVPIL GTVTKKCKVK KEAPFVFRIT LVQGLNRQIR RMCEHFGYEV KKLERTRIMN VSLSGIPLGE WRDLTDDELI DLFKLIENSS SEVKPKAKAK PKTAGIKRPV VKMEKTAEKG GRPASNGKRF TSPGRKKKGR // ID 3DH3F STANDARD; PRT; 22 AA. DT CONVERTED FROM PDB (SEQRES) 3DH3 DE stem loop fragment of E. Coli 23S RNA OS syntetic CC EXPDTA X-RAY DIFFRACTION CC RESOLU 3.000 CC R-Factor 0.234 FT #SUB 1 2587 A F 2 2588 G E DNA/RNA S 30 FT #SUB 2 2588 G F 1 2587 A E DNA/RNA S 32 FT #SUB 2 2588 G F 2 2588 G E DNA/RNA S 1 FT #SUB 2 2588 G F 20 2606 C E DNA/RNA S 15 FT #SUB 2 2588 G F 21 2607 G E DNA/RNA S 25 FT #SUB 20 2606 C F 2 2588 G E DNA/RNA S 13 FT #SUB 21 2607 G F 2 2588 G E DNA/RNA S 33 FT #SUB 3 2589 A F 83 83 GLU B Protein S 1 FT #SUB 4 2590 A F 82 82 THR B Protein S 4 FT #SUB 4 2590 A F 83 83 GLU B Protein S 3 FT #SUB 4 2590 A F 105 105 ARG B Protein S 2 FT #SUB 5 2591 C F 20 20 SER B Protein S 9 FT #SUB 5 2591 C F 22 22 ARG B Protein S 11 FT #SUB 5 2591 C F 23 23 GLU B Protein S 2 FT #SUB 5 2591 C F 82 82 THR B Protein S 6 FT #SUB 5 2591 C F 99 99 ARG B Protein S 1 FT #SUB 5 2591 C F 101 101 PHE B Protein S 2 FT #SUB 6 2592 G F 14 14 SER B Protein S 1 FT #SUB 6 2592 G F 20 20 SER B Protein S 8 FT #SUB 6 2592 G F 21 21 ARG B Protein S 5 FT #SUB 6 2592 G F 22 22 ARG B Protein S 7 FT #SUB 6 2592 G F 99 99 ARG B Protein S 4 FT #SUB 6 2592 G F 101 101 PHE B Protein S 3 FT #SUB 6 2592 G F 120 120 GLY B Protein S 6 FT #SUB 6 2592 G F 123 123 VAL B Protein S 3 FT #SUB 6 2592 G F 124 124 ASN B Protein S 11 FT #SUB 6 2592 G F 128 128 ARG B Protein S 1 FT #SUB 7 2593 U F 11 11 LYS B Protein S 5 FT #SUB 7 2593 U F 21 21 ARG B Protein S 6 FT #SUB 7 2593 U F 22 22 ARG B Protein S 3 FT #SUB 7 2593 U F 120 120 GLY B Protein S 5 FT #SUB 7 2593 U F 124 124 ASN B Protein S 2 FT #SUB 7 2593 U F 240 240 SER B Protein S 5 FT #SUB 7 2593 U F 241 241 SER B Protein S 1 FT #SUB 8 2594 C F 11 11 LYS B Protein S 5 FT #SUB 8 2594 C F 21 21 ARG B Protein S 5 FT #SUB 8 2594 C F 241 241 SER B Protein S 3 FT #SUB 9 2595 G F 8 8 ARG B Protein S 17 FT #SUB 9 2595 G F 10 10 ASN B Protein S 2 FT #SUB 9 2595 G F 21 21 ARG B Protein S 6 FT #SUB 10 2596 U F 8 8 ARG B Protein S 6 FT #SUB 10 2596 U F 42 42 ILE B Protein S 2 FT #SUB 10 2596 U F 43 43 GLY B Protein S 3 FT #SUB 10 2596 U F 44 44 ASP B Protein S 3 FT #SUB 11 2597 G F 8 8 ARG B Protein S 6 FT #SUB 11 2597 G F 10 10 ASN B Protein S 3 FT #SUB 11 2597 G F 25 25 ASP B Protein S 9 FT #SUB 11 2597 G F 42 42 ILE B Protein S 10 FT #SUB 11 2597 G F 43 43 GLY B Protein S 2 FT #SUB 14 2600 A F 22 22 ARG B Protein S 1 FT #SUB 15 2601 C F 128 128 ARG B Protein S 7 FT #SUB 16 2602 A F 124 124 ASN B Protein S 2 FT #SUB 16 2602 A F 128 128 ARG B Protein S 6 FT #SUB 17 2603 G F 104 104 GLY B Protein S 2 FT #SUB 17 2603 G F 105 105 ARG B Protein S 23 FT #SUB 17 2603 G F 127 127 LEU B Protein S 4 FT #SUB 17 2603 G F 183 183 GLN B Protein S 1 FT #SUB 17 2603 G F 184 184 GLY B Protein S 15 FT #SUB 17 2603 G F 185 185 LEU B Protein S 3 FT #SUB 18 2604 FHU F 104 104 GLY B Protein S 1 FT #SUB 18 2604 FHU F 105 105 ARG B Protein S 5 FT #SUB 18 2604 FHU F 106 106 LEU B Protein S 4 FT #SUB 18 2604 FHU F 107 107 ASP B Protein S 17 FT #SUB 18 2604 FHU F 110 110 SER B Protein S 3 FT #SUB 18 2604 FHU F 135 135 LYS B Protein S 1 FT #SUB 18 2604 FHU F 137 137 TYR B Protein S 7 FT #SUB 18 2604 FHU F 183 183 GLN B Protein S 1 FT #SUB 18 2604 FHU F 184 184 GLY B Protein S 10 FT #SUB 18 2604 FHU F 185 185 LEU B Protein S 5 FT #SUB 18 2604 FHU F 186 186 ASN B Protein S 3 FT #SUB 18 2604 FHU F 187 187 ARG B Protein S 14 FT #SUB 18 2604 FHU F 188 188 GLN B Protein S 4 FT #SUB 18 2604 FHU F 189 189 ILE B Protein S 11 FT #SUB 18 2604 FHU F 190 190 ARG B Protein S 3 FT #SUB 18 2604 FHU F 203 203 LEU B Protein S 3 FT #SUB 18 2604 FHU F 205 205 ARG B Protein S 2 FT #SUB 19 2605 U F 79 79 VAL B Protein S 1 FT #SUB 19 2605 U F 105 105 ARG B Protein S 29 FT #SUB 19 2605 U F 107 107 ASP B Protein S 2 FT #SUB 19 2605 U F 186 186 ASN B Protein S 8 FT #SUB 20 2606 C F 107 107 ASP B Protein S 4 FT #SUB 20 2606 C F 108 108 LYS B Protein S 6 FT #SUB 20 2606 C F 109 109 ASP B Protein S 1 FT #SUB 20 2606 C F 187 187 ARG B Protein S 5 FT #SUB 21 2607 G F 108 108 LYS B Protein S 4 CC SEQUENCE 22 AA (ATOM); CC agaacgucgu gagacagXuc gg CC !---- CC ALIGNMENT OF SEQRES AND ATOMRES CC SEQRES agaacgucgugagacagXucgg CC ATOM agaacgucgugagacagXucgg CC ********************** SQ SEQUENCE 22 AA; MW; CN; agaacgucgu gagacagXuc gg // ID 3DH3C STANDARD; PRT; 290 AA. DT CONVERTED FROM PDB (SEQRES) 3DH3 DE Ribosomal large subunit pseudouridine synthase F OS Escherichia coli CC EXPDTA X-RAY DIFFRACTION CC RESOLU 3.000 CC R-Factor 0.234 FT #SUB 75 75 PRO C 36 36 ASN B Protein S 2 FT #SUB 88 88 ASP C 38 38 LYS B Protein S 3 FT #SUB 93 93 PHE C 36 36 ASN B Protein S 3 FT #SUB 217 217 PRO C 58 58 LEU B Protein S 2 FT #SUB 218 218 LEU C 36 36 ASN B Protein S 3 FT #SUB 218 218 LEU C 49 49 GLY B Protein S 2 FT #SUB 218 218 LEU C 50 50 ASP B Protein S 2 FT #SUB 218 218 LEU C 51 51 VAL B Protein A 7 FT #SUB 219 219 GLY C 51 51 VAL B Protein B 1 FT #SUB 220 220 GLU C 53 53 LYS B Protein S 8 FT #SUB 8 8 ARG C 9 2595 G G DNA/RNA S 20 FT #SUB 8 8 ARG C 10 2596 U G DNA/RNA S 6 FT #SUB 8 8 ARG C 11 2597 G G DNA/RNA S 6 FT #SUB 10 10 ASN C 9 2595 G G DNA/RNA S 3 FT #SUB 10 10 ASN C 11 2597 G G DNA/RNA S 3 FT #SUB 11 11 LYS C 7 2593 U G DNA/RNA S 5 FT #SUB 11 11 LYS C 8 2594 C G DNA/RNA S 5 FT #SUB 14 14 SER C 6 2592 G G DNA/RNA S 1 FT #SUB 20 20 SER C 5 2591 C G DNA/RNA S 6 FT #SUB 20 20 SER C 6 2592 G G DNA/RNA A 6 FT #SUB 21 21 ARG C 6 2592 G G DNA/RNA A 4 FT #SUB 21 21 ARG C 7 2593 U G DNA/RNA S 5 FT #SUB 21 21 ARG C 8 2594 C G DNA/RNA S 5 FT #SUB 21 21 ARG C 9 2595 G G DNA/RNA S 6 FT #SUB 22 22 ARG C 5 2591 C G DNA/RNA S 7 FT #SUB 22 22 ARG C 6 2592 G G DNA/RNA S 5 FT #SUB 22 22 ARG C 7 2593 U G DNA/RNA S 2 FT #SUB 22 22 ARG C 14 2600 A G DNA/RNA S 1 FT #SUB 23 23 GLU C 5 2591 C G DNA/RNA S 1 FT #SUB 25 25 ASP C 11 2597 G G DNA/RNA S 7 FT #SUB 42 42 ILE C 10 2596 U G DNA/RNA B 1 FT #SUB 42 42 ILE C 11 2597 G G DNA/RNA S 10 FT #SUB 43 43 GLY C 10 2596 U G DNA/RNA B 3 FT #SUB 43 43 GLY C 11 2597 G G DNA/RNA B 2 FT #SUB 44 44 ASP C 10 2596 U G DNA/RNA B 2 FT #SUB 79 79 VAL C 19 2605 U G DNA/RNA S 1 FT #SUB 79 79 VAL C 20 2606 C G DNA/RNA S 2 FT #SUB 82 82 THR C 4 2590 A G DNA/RNA A 4 FT #SUB 82 82 THR C 5 2591 C G DNA/RNA S 8 FT #SUB 83 83 GLU C 3 2589 A G DNA/RNA S 2 FT #SUB 83 83 GLU C 4 2590 A G DNA/RNA A 5 FT #SUB 86 86 GLU C 20 2606 C G DNA/RNA S 1 FT #SUB 99 99 ARG C 5 2591 C G DNA/RNA S 2 FT #SUB 99 99 ARG C 6 2592 G G DNA/RNA S 4 FT #SUB 101 101 PHE C 5 2591 C G DNA/RNA S 2 FT #SUB 101 101 PHE C 6 2592 G G DNA/RNA S 6 FT #SUB 104 104 GLY C 17 2603 G G DNA/RNA B 2 FT #SUB 105 105 ARG C 3 2589 A G DNA/RNA S 2 FT #SUB 105 105 ARG C 4 2590 A G DNA/RNA S 2 FT #SUB 105 105 ARG C 17 2603 G G DNA/RNA A 21 FT #SUB 105 105 ARG C 18 2604 FHU G DNA/RNA B 5 FT #SUB 105 105 ARG C 19 2605 U G DNA/RNA A 27 FT #SUB 106 106 LEU C 18 2604 FHU G DNA/RNA A 3 FT #SUB 107 107 ASP C 18 2604 FHU G DNA/RNA A 15 FT #SUB 107 107 ASP C 19 2605 U G DNA/RNA A 4 FT #SUB 107 107 ASP C 20 2606 C G DNA/RNA A 3 FT #SUB 108 108 LYS C 19 2605 U G DNA/RNA B 1 FT #SUB 108 108 LYS C 20 2606 C G DNA/RNA A 9 FT #SUB 108 108 LYS C 21 2607 G G DNA/RNA S 5 FT #SUB 109 109 ASP C 20 2606 C G DNA/RNA S 1 FT #SUB 110 110 SER C 18 2604 FHU G DNA/RNA S 4 FT #SUB 120 120 GLY C 6 2592 G G DNA/RNA B 7 FT #SUB 120 120 GLY C 7 2593 U G DNA/RNA B 9 FT #SUB 121 121 ASP C 7 2593 U G DNA/RNA B 1 FT #SUB 123 123 VAL C 6 2592 G G DNA/RNA S 3 FT #SUB 124 124 ASN C 6 2592 G G DNA/RNA S 12 FT #SUB 124 124 ASN C 7 2593 U G DNA/RNA S 4 FT #SUB 124 124 ASN C 16 2602 A G DNA/RNA S 2 FT #SUB 127 127 LEU C 17 2603 G G DNA/RNA A 9 FT #SUB 128 128 ARG C 6 2592 G G DNA/RNA S 1 FT #SUB 128 128 ARG C 15 2601 C G DNA/RNA S 7 FT #SUB 128 128 ARG C 16 2602 A G DNA/RNA A 9 FT #SUB 135 135 LYS C 18 2604 FHU G DNA/RNA S 4 FT #SUB 137 137 TYR C 18 2604 FHU G DNA/RNA S 10 FT #SUB 183 183 GLN C 17 2603 G G DNA/RNA S 1 FT #SUB 183 183 GLN C 18 2604 FHU G DNA/RNA B 1 FT #SUB 184 184 GLY C 17 2603 G G DNA/RNA B 15 FT #SUB 184 184 GLY C 18 2604 FHU G DNA/RNA B 8 FT #SUB 185 185 LEU C 17 2603 G G DNA/RNA A 3 FT #SUB 185 185 LEU C 18 2604 FHU G DNA/RNA B 5 FT #SUB 186 186 ASN C 18 2604 FHU G DNA/RNA B 3 FT #SUB 186 186 ASN C 19 2605 U G DNA/RNA A 8 FT #SUB 187 187 ARG C 18 2604 FHU G DNA/RNA A 12 FT #SUB 187 187 ARG C 20 2606 C G DNA/RNA S 5 FT #SUB 188 188 GLN C 18 2604 FHU G DNA/RNA B 4 FT #SUB 189 189 ILE C 18 2604 FHU G DNA/RNA A 13 FT #SUB 190 190 ARG C 18 2604 FHU G DNA/RNA A 4 FT #SUB 203 203 LEU C 18 2604 FHU G DNA/RNA S 3 FT #SUB 205 205 ARG C 18 2604 FHU G DNA/RNA S 4 FT #SUB 240 240 SER C 7 2593 U G DNA/RNA A 5 FT #SUB 241 241 SER C 7 2593 U G DNA/RNA S 1 FT DISORDER 1 3 FT DISORDER 243 290 CC SEQUENCE 239 AA (ATOM); CC DSSVRLNKYI SESGICSRRE ADRYIEQGNV FLNGKRATIG DQVKPGDVVK VNGQLIEPRE CC AEDLVLIALN KPVGIVSTTE DGERDNIVDF VNHSKRVFPI GRLDKDSQGL IFLTNHGDLV CC NKILRAGNDH EKEYLVTVDK PITEEFIRGM SAGVPILGTV TKKCKVKKEA PFVFRITLVQ CC GLNRQIRRMC EHFGYEVKKL ERTRIMNVSL SGIPLGEWRD LTDDELIDLF KLIENSSSE CC !---- CC ALIGNMENT OF SEQRES AND ATOMRES CC SEQRES MLPDSSVRLNKYISESGICSRREADRYIEQGNVFLNGKRATIGDQVKPGD CC ATOM ---DSSVRLNKYISESGICSRREADRYIEQGNVFLNGKRATIGDQVKPGD CC *********************************************** CC SEQRES VVKVNGQLIEPREAEDLVLIALNKPVGIVSTTEDGERDNIVDFVNHSKRV CC ATOM VVKVNGQLIEPREAEDLVLIALNKPVGIVSTTEDGERDNIVDFVNHSKRV CC ************************************************** CC SEQRES FPIGRLDKDSQGLIFLTNHGDLVNKILRAGNDHEKEYLVTVDKPITEEFI CC ATOM FPIGRLDKDSQGLIFLTNHGDLVNKILRAGNDHEKEYLVTVDKPITEEFI CC ************************************************** CC SEQRES RGMSAGVPILGTVTKKCKVKKEAPFVFRITLVQGLNRQIRRMCEHFGYEV CC ATOM RGMSAGVPILGTVTKKCKVKKEAPFVFRITLVQGLNRQIRRMCEHFGYEV CC ************************************************** CC SEQRES KKLERTRIMNVSLSGIPLGEWRDLTDDELIDLFKLIENSSSEVKPKAKAK CC ATOM KKLERTRIMNVSLSGIPLGEWRDLTDDELIDLFKLIENSSSE-------- CC ****************************************** CC SEQRES PKTAGIKRPVVKMEKTAEKGGRPASNGKRFTSPGRKKKGR CC ATOM ---------------------------------------- CC SQ SEQUENCE 290 AA; MW; CN; MLPDSSVRLN KYISESGICS RREADRYIEQ GNVFLNGKRA TIGDQVKPGD VVKVNGQLIE PREAEDLVLI ALNKPVGIVS TTEDGERDNI VDFVNHSKRV FPIGRLDKDS QGLIFLTNHG DLVNKILRAG NDHEKEYLVT VDKPITEEFI RGMSAGVPIL GTVTKKCKVK KEAPFVFRIT LVQGLNRQIR RMCEHFGYEV KKLERTRIMN VSLSGIPLGE WRDLTDDELI DLFKLIENSS SEVKPKAKAK PKTAGIKRPV VKMEKTAEKG GRPASNGKRF TSPGRKKKGR // ID 3DH3G STANDARD; PRT; 22 AA. DT CONVERTED FROM PDB (SEQRES) 3DH3 DE stem loop fragment of E. Coli 23S RNA OS syntetic CC EXPDTA X-RAY DIFFRACTION CC RESOLU 3.000 CC R-Factor 0.234 FT #SUB 3 2589 A G 83 83 GLU C Protein S 2 FT #SUB 3 2589 A G 105 105 ARG C Protein S 2 FT #SUB 4 2590 A G 82 82 THR C Protein S 4 FT #SUB 4 2590 A G 83 83 GLU C Protein S 5 FT #SUB 4 2590 A G 105 105 ARG C Protein S 2 FT #SUB 5 2591 C G 20 20 SER C Protein S 6 FT #SUB 5 2591 C G 22 22 ARG C Protein S 7 FT #SUB 5 2591 C G 23 23 GLU C Protein S 1 FT #SUB 5 2591 C G 82 82 THR C Protein S 8 FT #SUB 5 2591 C G 99 99 ARG C Protein S 2 FT #SUB 5 2591 C G 101 101 PHE C Protein S 2 FT #SUB 6 2592 G G 14 14 SER C Protein S 1 FT #SUB 6 2592 G G 20 20 SER C Protein S 6 FT #SUB 6 2592 G G 21 21 ARG C Protein S 4 FT #SUB 6 2592 G G 22 22 ARG C Protein S 5 FT #SUB 6 2592 G G 99 99 ARG C Protein S 4 FT #SUB 6 2592 G G 101 101 PHE C Protein S 6 FT #SUB 6 2592 G G 120 120 GLY C Protein S 7 FT #SUB 6 2592 G G 123 123 VAL C Protein S 3 FT #SUB 6 2592 G G 124 124 ASN C Protein S 12 FT #SUB 6 2592 G G 128 128 ARG C Protein S 1 FT #SUB 7 2593 U G 11 11 LYS C Protein S 5 FT #SUB 7 2593 U G 21 21 ARG C Protein S 5 FT #SUB 7 2593 U G 22 22 ARG C Protein S 2 FT #SUB 7 2593 U G 120 120 GLY C Protein S 9 FT #SUB 7 2593 U G 121 121 ASP C Protein S 1 FT #SUB 7 2593 U G 124 124 ASN C Protein S 4 FT #SUB 7 2593 U G 240 240 SER C Protein S 5 FT #SUB 7 2593 U G 241 241 SER C Protein S 1 FT #SUB 8 2594 C G 11 11 LYS C Protein S 5 FT #SUB 8 2594 C G 21 21 ARG C Protein S 5 FT #SUB 9 2595 G G 8 8 ARG C Protein S 20 FT #SUB 9 2595 G G 10 10 ASN C Protein S 3 FT #SUB 9 2595 G G 21 21 ARG C Protein S 6 FT #SUB 10 2596 U G 8 8 ARG C Protein S 6 FT #SUB 10 2596 U G 42 42 ILE C Protein S 1 FT #SUB 10 2596 U G 43 43 GLY C Protein S 3 FT #SUB 10 2596 U G 44 44 ASP C Protein S 2 FT #SUB 11 2597 G G 8 8 ARG C Protein S 6 FT #SUB 11 2597 G G 10 10 ASN C Protein S 3 FT #SUB 11 2597 G G 25 25 ASP C Protein S 7 FT #SUB 11 2597 G G 42 42 ILE C Protein S 10 FT #SUB 11 2597 G G 43 43 GLY C Protein S 2 FT #SUB 14 2600 A G 22 22 ARG C Protein S 1 FT #SUB 15 2601 C G 128 128 ARG C Protein S 7 FT #SUB 16 2602 A G 124 124 ASN C Protein S 2 FT #SUB 16 2602 A G 128 128 ARG C Protein S 9 FT #SUB 17 2603 G G 104 104 GLY C Protein S 2 FT #SUB 17 2603 G G 105 105 ARG C Protein S 21 FT #SUB 17 2603 G G 127 127 LEU C Protein S 9 FT #SUB 17 2603 G G 183 183 GLN C Protein S 1 FT #SUB 17 2603 G G 184 184 GLY C Protein S 15 FT #SUB 17 2603 G G 185 185 LEU C Protein S 3 FT #SUB 18 2604 FHU G 105 105 ARG C Protein S 5 FT #SUB 18 2604 FHU G 106 106 LEU C Protein S 3 FT #SUB 18 2604 FHU G 107 107 ASP C Protein S 15 FT #SUB 18 2604 FHU G 110 110 SER C Protein S 4 FT #SUB 18 2604 FHU G 135 135 LYS C Protein S 4 FT #SUB 18 2604 FHU G 137 137 TYR C Protein S 10 FT #SUB 18 2604 FHU G 183 183 GLN C Protein S 1 FT #SUB 18 2604 FHU G 184 184 GLY C Protein S 8 FT #SUB 18 2604 FHU G 185 185 LEU C Protein S 5 FT #SUB 18 2604 FHU G 186 186 ASN C Protein S 3 FT #SUB 18 2604 FHU G 187 187 ARG C Protein S 12 FT #SUB 18 2604 FHU G 188 188 GLN C Protein S 4 FT #SUB 18 2604 FHU G 189 189 ILE C Protein S 13 FT #SUB 18 2604 FHU G 190 190 ARG C Protein S 4 FT #SUB 18 2604 FHU G 203 203 LEU C Protein S 3 FT #SUB 18 2604 FHU G 205 205 ARG C Protein S 4 FT #SUB 19 2605 U G 79 79 VAL C Protein S 1 FT #SUB 19 2605 U G 105 105 ARG C Protein S 27 FT #SUB 19 2605 U G 107 107 ASP C Protein S 4 FT #SUB 19 2605 U G 108 108 LYS C Protein S 1 FT #SUB 19 2605 U G 186 186 ASN C Protein S 8 FT #SUB 20 2606 C G 79 79 VAL C Protein S 2 FT #SUB 20 2606 C G 86 86 GLU C Protein S 1 FT #SUB 20 2606 C G 107 107 ASP C Protein S 3 FT #SUB 20 2606 C G 108 108 LYS C Protein S 9 FT #SUB 20 2606 C G 109 109 ASP C Protein S 1 FT #SUB 20 2606 C G 187 187 ARG C Protein S 5 FT #SUB 21 2607 G G 108 108 LYS C Protein S 5 FT #SUB 1 2587 A G 2 2588 G H DNA/RNA S 34 FT #SUB 2 2588 G G 1 2587 A H DNA/RNA S 41 FT #SUB 2 2588 G G 20 2606 C H DNA/RNA S 10 FT #SUB 2 2588 G G 21 2607 G H DNA/RNA S 22 FT #SUB 20 2606 C G 2 2588 G H DNA/RNA S 15 FT #SUB 21 2607 G G 2 2588 G H DNA/RNA S 27 CC SEQUENCE 22 AA (ATOM); CC agaacgucgu gagacagXuc gg CC !---- CC ALIGNMENT OF SEQRES AND ATOMRES CC SEQRES agaacgucgugagacagXucgg CC ATOM agaacgucgugagacagXucgg CC ********************** SQ SEQUENCE 22 AA; MW; CN; agaacgucgu gagacagXuc gg // ID 3DH3D STANDARD; PRT; 290 AA. DT CONVERTED FROM PDB (SEQRES) 3DH3 DE Ribosomal large subunit pseudouridine synthase F OS Escherichia coli CC EXPDTA X-RAY DIFFRACTION CC RESOLU 3.000 CC R-Factor 0.234 FT #SUB 36 36 ASN D 93 93 PHE A Protein B 1 FT #SUB 36 36 ASN D 218 218 LEU A Protein S 1 FT #SUB 37 37 GLY D 219 219 GLY A Protein B 1 FT #SUB 38 38 LYS D 88 88 ASP A Protein S 2 FT #SUB 38 38 LYS D 93 93 PHE A Protein S 1 FT #SUB 51 51 VAL D 218 218 LEU A Protein S 2 FT #SUB 53 53 LYS D 220 220 GLU A Protein S 9 FT #SUB 8 8 ARG D 9 2595 G H DNA/RNA S 24 FT #SUB 8 8 ARG D 10 2596 U H DNA/RNA S 8 FT #SUB 8 8 ARG D 11 2597 G H DNA/RNA S 9 FT #SUB 10 10 ASN D 9 2595 G H DNA/RNA S 4 FT #SUB 10 10 ASN D 11 2597 G H DNA/RNA S 5 FT #SUB 11 11 LYS D 7 2593 U H DNA/RNA S 5 FT #SUB 11 11 LYS D 8 2594 C H DNA/RNA S 4 FT #SUB 14 14 SER D 6 2592 G H DNA/RNA S 1 FT #SUB 20 20 SER D 5 2591 C H DNA/RNA S 9 FT #SUB 20 20 SER D 6 2592 G H DNA/RNA A 7 FT #SUB 21 21 ARG D 6 2592 G H DNA/RNA A 5 FT #SUB 21 21 ARG D 7 2593 U H DNA/RNA S 4 FT #SUB 21 21 ARG D 8 2594 C H DNA/RNA S 8 FT #SUB 21 21 ARG D 9 2595 G H DNA/RNA S 6 FT #SUB 22 22 ARG D 5 2591 C H DNA/RNA S 11 FT #SUB 22 22 ARG D 6 2592 G H DNA/RNA S 6 FT #SUB 22 22 ARG D 7 2593 U H DNA/RNA S 2 FT #SUB 22 22 ARG D 14 2600 A H DNA/RNA S 1 FT #SUB 23 23 GLU D 5 2591 C H DNA/RNA S 2 FT #SUB 25 25 ASP D 11 2597 G H DNA/RNA S 10 FT #SUB 42 42 ILE D 10 2596 U H DNA/RNA B 1 FT #SUB 42 42 ILE D 11 2597 G H DNA/RNA S 11 FT #SUB 43 43 GLY D 10 2596 U H DNA/RNA B 2 FT #SUB 43 43 GLY D 11 2597 G H DNA/RNA B 4 FT #SUB 44 44 ASP D 10 2596 U H DNA/RNA B 1 FT #SUB 79 79 VAL D 19 2605 U H DNA/RNA S 1 FT #SUB 79 79 VAL D 20 2606 C H DNA/RNA S 1 FT #SUB 82 82 THR D 4 2590 A H DNA/RNA A 4 FT #SUB 82 82 THR D 5 2591 C H DNA/RNA S 7 FT #SUB 83 83 GLU D 3 2589 A H DNA/RNA S 2 FT #SUB 83 83 GLU D 4 2590 A H DNA/RNA A 3 FT #SUB 99 99 ARG D 5 2591 C H DNA/RNA S 2 FT #SUB 99 99 ARG D 6 2592 G H DNA/RNA S 4 FT #SUB 101 101 PHE D 5 2591 C H DNA/RNA S 2 FT #SUB 101 101 PHE D 6 2592 G H DNA/RNA S 3 FT #SUB 104 104 GLY D 17 2603 G H DNA/RNA B 2 FT #SUB 105 105 ARG D 3 2589 A H DNA/RNA S 1 FT #SUB 105 105 ARG D 4 2590 A H DNA/RNA S 2 FT #SUB 105 105 ARG D 17 2603 G H DNA/RNA A 13 FT #SUB 105 105 ARG D 18 2604 FHU H DNA/RNA B 4 FT #SUB 105 105 ARG D 19 2605 U H DNA/RNA A 34 FT #SUB 106 106 LEU D 18 2604 FHU H DNA/RNA A 3 FT #SUB 107 107 ASP D 18 2604 FHU H DNA/RNA A 17 FT #SUB 107 107 ASP D 19 2605 U H DNA/RNA A 4 FT #SUB 107 107 ASP D 20 2606 C H DNA/RNA A 5 FT #SUB 108 108 LYS D 20 2606 C H DNA/RNA A 5 FT #SUB 108 108 LYS D 21 2607 G H DNA/RNA S 4 FT #SUB 110 110 SER D 18 2604 FHU H DNA/RNA S 4 FT #SUB 120 120 GLY D 6 2592 G H DNA/RNA B 7 FT #SUB 120 120 GLY D 7 2593 U H DNA/RNA B 7 FT #SUB 121 121 ASP D 7 2593 U H DNA/RNA B 1 FT #SUB 123 123 VAL D 6 2592 G H DNA/RNA S 2 FT #SUB 124 124 ASN D 6 2592 G H DNA/RNA S 13 FT #SUB 124 124 ASN D 7 2593 U H DNA/RNA S 4 FT #SUB 124 124 ASN D 16 2602 A H DNA/RNA S 3 FT #SUB 127 127 LEU D 17 2603 G H DNA/RNA S 7 FT #SUB 128 128 ARG D 6 2592 G H DNA/RNA S 1 FT #SUB 128 128 ARG D 15 2601 C H DNA/RNA S 8 FT #SUB 128 128 ARG D 16 2602 A H DNA/RNA A 10 FT #SUB 135 135 LYS D 18 2604 FHU H DNA/RNA S 4 FT #SUB 137 137 TYR D 18 2604 FHU H DNA/RNA S 8 FT #SUB 183 183 GLN D 17 2603 G H DNA/RNA S 1 FT #SUB 183 183 GLN D 18 2604 FHU H DNA/RNA B 2 FT #SUB 184 184 GLY D 17 2603 G H DNA/RNA B 15 FT #SUB 184 184 GLY D 18 2604 FHU H DNA/RNA B 9 FT #SUB 185 185 LEU D 17 2603 G H DNA/RNA A 3 FT #SUB 185 185 LEU D 18 2604 FHU H DNA/RNA B 4 FT #SUB 186 186 ASN D 18 2604 FHU H DNA/RNA B 2 FT #SUB 186 186 ASN D 19 2605 U H DNA/RNA A 9 FT #SUB 187 187 ARG D 18 2604 FHU H DNA/RNA A 13 FT #SUB 187 187 ARG D 20 2606 C H DNA/RNA S 4 FT #SUB 188 188 GLN D 18 2604 FHU H DNA/RNA A 6 FT #SUB 189 189 ILE D 18 2604 FHU H DNA/RNA A 9 FT #SUB 190 190 ARG D 18 2604 FHU H DNA/RNA A 4 FT #SUB 203 203 LEU D 18 2604 FHU H DNA/RNA S 3 FT #SUB 205 205 ARG D 18 2604 FHU H DNA/RNA S 4 FT #SUB 240 240 SER D 7 2593 U H DNA/RNA A 6 FT #SUB 241 241 SER D 7 2593 U H DNA/RNA A 3 FT #SUB 241 241 SER D 8 2594 C H DNA/RNA S 3 FT #SUB 242 242 GLU D 14 2600 A H DNA/RNA S 3 FT #SUB 242 242 GLU D 15 2601 C H DNA/RNA S 7 FT DISORDER 1 3 FT DISORDER 243 290 CC SEQUENCE 239 AA (ATOM); CC DSSVRLNKYI SESGICSRRE ADRYIEQGNV FLNGKRATIG DQVKPGDVVK VNGQLIEPRE CC AEDLVLIALN KPVGIVSTTE DGERDNIVDF VNHSKRVFPI GRLDKDSQGL IFLTNHGDLV CC NKILRAGNDH EKEYLVTVDK PITEEFIRGM SAGVPILGTV TKKCKVKKEA PFVFRITLVQ CC GLNRQIRRMC EHFGYEVKKL ERTRIMNVSL SGIPLGEWRD LTDDELIDLF KLIENSSSE CC !---- CC ALIGNMENT OF SEQRES AND ATOMRES CC SEQRES MLPDSSVRLNKYISESGICSRREADRYIEQGNVFLNGKRATIGDQVKPGD CC ATOM ---DSSVRLNKYISESGICSRREADRYIEQGNVFLNGKRATIGDQVKPGD CC *********************************************** CC SEQRES VVKVNGQLIEPREAEDLVLIALNKPVGIVSTTEDGERDNIVDFVNHSKRV CC ATOM VVKVNGQLIEPREAEDLVLIALNKPVGIVSTTEDGERDNIVDFVNHSKRV CC ************************************************** CC SEQRES FPIGRLDKDSQGLIFLTNHGDLVNKILRAGNDHEKEYLVTVDKPITEEFI CC ATOM FPIGRLDKDSQGLIFLTNHGDLVNKILRAGNDHEKEYLVTVDKPITEEFI CC ************************************************** CC SEQRES RGMSAGVPILGTVTKKCKVKKEAPFVFRITLVQGLNRQIRRMCEHFGYEV CC ATOM RGMSAGVPILGTVTKKCKVKKEAPFVFRITLVQGLNRQIRRMCEHFGYEV CC ************************************************** CC SEQRES KKLERTRIMNVSLSGIPLGEWRDLTDDELIDLFKLIENSSSEVKPKAKAK CC ATOM KKLERTRIMNVSLSGIPLGEWRDLTDDELIDLFKLIENSSSE-------- CC ****************************************** CC SEQRES PKTAGIKRPVVKMEKTAEKGGRPASNGKRFTSPGRKKKGR CC ATOM ---------------------------------------- CC SQ SEQUENCE 290 AA; MW; CN; MLPDSSVRLN KYISESGICS RREADRYIEQ GNVFLNGKRA TIGDQVKPGD VVKVNGQLIE PREAEDLVLI ALNKPVGIVS TTEDGERDNI VDFVNHSKRV FPIGRLDKDS QGLIFLTNHG DLVNKILRAG NDHEKEYLVT VDKPITEEFI RGMSAGVPIL GTVTKKCKVK KEAPFVFRIT LVQGLNRQIR RMCEHFGYEV KKLERTRIMN VSLSGIPLGE WRDLTDDELI DLFKLIENSS SEVKPKAKAK PKTAGIKRPV VKMEKTAEKG GRPASNGKRF TSPGRKKKGR // ID 3DH3H STANDARD; PRT; 22 AA. DT CONVERTED FROM PDB (SEQRES) 3DH3 DE stem loop fragment of E. Coli 23S RNA OS syntetic CC EXPDTA X-RAY DIFFRACTION CC RESOLU 3.000 CC R-Factor 0.234 FT #SUB 1 2587 A H 2 2588 G G DNA/RNA S 41 FT #SUB 2 2588 G H 1 2587 A G DNA/RNA S 34 FT #SUB 2 2588 G H 20 2606 C G DNA/RNA S 15 FT #SUB 2 2588 G H 21 2607 G G DNA/RNA S 27 FT #SUB 20 2606 C H 2 2588 G G DNA/RNA S 10 FT #SUB 21 2607 G H 2 2588 G G DNA/RNA S 22 FT #SUB 3 2589 A H 83 83 GLU D Protein S 2 FT #SUB 3 2589 A H 105 105 ARG D Protein S 1 FT #SUB 4 2590 A H 82 82 THR D Protein S 4 FT #SUB 4 2590 A H 83 83 GLU D Protein S 3 FT #SUB 4 2590 A H 105 105 ARG D Protein S 2 FT #SUB 5 2591 C H 20 20 SER D Protein S 9 FT #SUB 5 2591 C H 22 22 ARG D Protein S 11 FT #SUB 5 2591 C H 23 23 GLU D Protein S 2 FT #SUB 5 2591 C H 82 82 THR D Protein S 7 FT #SUB 5 2591 C H 99 99 ARG D Protein S 2 FT #SUB 5 2591 C H 101 101 PHE D Protein S 2 FT #SUB 6 2592 G H 14 14 SER D Protein S 1 FT #SUB 6 2592 G H 20 20 SER D Protein S 7 FT #SUB 6 2592 G H 21 21 ARG D Protein S 5 FT #SUB 6 2592 G H 22 22 ARG D Protein S 6 FT #SUB 6 2592 G H 99 99 ARG D Protein S 4 FT #SUB 6 2592 G H 101 101 PHE D Protein S 3 FT #SUB 6 2592 G H 120 120 GLY D Protein S 7 FT #SUB 6 2592 G H 123 123 VAL D Protein S 2 FT #SUB 6 2592 G H 124 124 ASN D Protein S 13 FT #SUB 6 2592 G H 128 128 ARG D Protein S 1 FT #SUB 7 2593 U H 11 11 LYS D Protein S 5 FT #SUB 7 2593 U H 21 21 ARG D Protein S 4 FT #SUB 7 2593 U H 22 22 ARG D Protein S 2 FT #SUB 7 2593 U H 120 120 GLY D Protein S 7 FT #SUB 7 2593 U H 121 121 ASP D Protein S 1 FT #SUB 7 2593 U H 124 124 ASN D Protein S 4 FT #SUB 7 2593 U H 240 240 SER D Protein S 6 FT #SUB 7 2593 U H 241 241 SER D Protein S 3 FT #SUB 8 2594 C H 11 11 LYS D Protein S 4 FT #SUB 8 2594 C H 21 21 ARG D Protein S 8 FT #SUB 8 2594 C H 241 241 SER D Protein S 3 FT #SUB 9 2595 G H 8 8 ARG D Protein S 24 FT #SUB 9 2595 G H 10 10 ASN D Protein S 4 FT #SUB 9 2595 G H 21 21 ARG D Protein S 6 FT #SUB 10 2596 U H 8 8 ARG D Protein S 8 FT #SUB 10 2596 U H 42 42 ILE D Protein S 1 FT #SUB 10 2596 U H 43 43 GLY D Protein S 2 FT #SUB 10 2596 U H 44 44 ASP D Protein S 1 FT #SUB 11 2597 G H 8 8 ARG D Protein S 9 FT #SUB 11 2597 G H 10 10 ASN D Protein S 5 FT #SUB 11 2597 G H 25 25 ASP D Protein S 10 FT #SUB 11 2597 G H 42 42 ILE D Protein S 11 FT #SUB 11 2597 G H 43 43 GLY D Protein S 4 FT #SUB 14 2600 A H 22 22 ARG D Protein S 1 FT #SUB 14 2600 A H 242 242 GLU D Protein S 3 FT #SUB 15 2601 C H 128 128 ARG D Protein S 8 FT #SUB 15 2601 C H 242 242 GLU D Protein S 7 FT #SUB 16 2602 A H 124 124 ASN D Protein S 3 FT #SUB 16 2602 A H 128 128 ARG D Protein S 10 FT #SUB 17 2603 G H 104 104 GLY D Protein S 2 FT #SUB 17 2603 G H 105 105 ARG D Protein S 13 FT #SUB 17 2603 G H 127 127 LEU D Protein S 7 FT #SUB 17 2603 G H 183 183 GLN D Protein S 1 FT #SUB 17 2603 G H 184 184 GLY D Protein S 15 FT #SUB 17 2603 G H 185 185 LEU D Protein S 3 FT #SUB 18 2604 FHU H 105 105 ARG D Protein S 4 FT #SUB 18 2604 FHU H 106 106 LEU D Protein S 3 FT #SUB 18 2604 FHU H 107 107 ASP D Protein S 17 FT #SUB 18 2604 FHU H 110 110 SER D Protein S 4 FT #SUB 18 2604 FHU H 135 135 LYS D Protein S 4 FT #SUB 18 2604 FHU H 137 137 TYR D Protein S 8 FT #SUB 18 2604 FHU H 183 183 GLN D Protein S 2 FT #SUB 18 2604 FHU H 184 184 GLY D Protein S 9 FT #SUB 18 2604 FHU H 185 185 LEU D Protein S 4 FT #SUB 18 2604 FHU H 186 186 ASN D Protein S 2 FT #SUB 18 2604 FHU H 187 187 ARG D Protein S 13 FT #SUB 18 2604 FHU H 188 188 GLN D Protein S 6 FT #SUB 18 2604 FHU H 189 189 ILE D Protein S 9 FT #SUB 18 2604 FHU H 190 190 ARG D Protein S 4 FT #SUB 18 2604 FHU H 203 203 LEU D Protein S 3 FT #SUB 18 2604 FHU H 205 205 ARG D Protein S 4 FT #SUB 19 2605 U H 79 79 VAL D Protein S 1 FT #SUB 19 2605 U H 105 105 ARG D Protein S 34 FT #SUB 19 2605 U H 107 107 ASP D Protein S 4 FT #SUB 19 2605 U H 186 186 ASN D Protein S 9 FT #SUB 20 2606 C H 79 79 VAL D Protein S 1 FT #SUB 20 2606 C H 107 107 ASP D Protein S 5 FT #SUB 20 2606 C H 108 108 LYS D Protein S 5 FT #SUB 20 2606 C H 187 187 ARG D Protein S 4 FT #SUB 21 2607 G H 108 108 LYS D Protein S 4 CC SEQUENCE 22 AA (ATOM); CC agaacgucgu gagacagXuc gg CC !---- CC ALIGNMENT OF SEQRES AND ATOMRES CC SEQRES agaacgucgugagacagXucgg CC ATOM agaacgucgugagacagXucgg CC ********************** SQ SEQUENCE 22 AA; MW; CN; agaacgucgu gagacagXuc gg //