data_Z6J # _chem_comp.id Z6J _chem_comp.name alpha-L-ribofuranose _chem_comp.type "L-saccharide, alpha linking" _chem_comp.pdbx_type ATOMS _chem_comp.formula "C5 H10 O5" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms "alpha-L-ribose; L-ribose; ribose" _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2012-12-19 _chem_comp.pdbx_modified_date 2020-07-17 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 150.130 _chem_comp.one_letter_code ? _chem_comp.three_letter_code Z6J _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 2VGD _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site RCSB # # loop_ _pdbx_chem_comp_synonyms.ordinal _pdbx_chem_comp_synonyms.comp_id _pdbx_chem_comp_synonyms.name _pdbx_chem_comp_synonyms.provenance _pdbx_chem_comp_synonyms.type 1 Z6J alpha-L-ribose PDB ? 2 Z6J L-ribose PDB ? 3 Z6J ribose PDB ? # # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal Z6J O5 O1 O 0 1 N N N -3.205 -28.246 0.720 3.093 0.780 -0.477 O5 Z6J 1 Z6J C5 C1 C 0 1 N N N -2.236 -28.901 1.551 2.307 -0.168 0.248 C5 Z6J 2 Z6J C4 C2 C 0 1 N N S -1.309 -29.787 0.729 0.846 -0.063 -0.193 C4 Z6J 3 Z6J O4 O2 O 0 1 N N N -0.647 -28.993 -0.260 0.297 1.206 0.199 O4 Z6J 4 Z6J C3 C3 C 0 1 N N R -2.054 -30.904 0.006 -0.016 -1.120 0.542 C3 Z6J 5 Z6J O3 O3 O 0 1 N N N -1.484 -32.164 0.372 -0.007 -2.367 -0.156 O3 Z6J 6 Z6J C2 C4 C 0 1 N N S -1.859 -30.606 -1.473 -1.417 -0.454 0.481 C2 Z6J 7 Z6J O2 O4 O 0 1 N N N -1.558 -31.776 -2.239 -2.061 -0.737 -0.763 O2 Z6J 8 Z6J C1 C5 C 0 1 N N R -0.689 -29.638 -1.535 -1.071 1.046 0.591 C1 Z6J 9 Z6J O1 O5 O 0 1 N Y N 0.607 -29.926 -1.728 -1.916 1.804 -0.277 O1 Z6J 10 Z6J H51 H11 H 0 1 N N N -1.636 -28.139 2.070 2.675 -1.174 0.048 H51 Z6J 11 Z6J H52 H12 H 0 1 N N N -2.761 -29.522 2.292 2.380 0.040 1.316 H52 Z6J 12 Z6J H4 H21 H 0 1 N N N -0.567 -30.240 1.403 0.766 -0.192 -1.272 H4 Z6J 13 Z6J H3 H31 H 0 1 N N N -3.124 -30.863 0.258 0.315 -1.248 1.573 H3 Z6J 14 Z6J HO3 H3O H 0 1 N Y N -1.945 -32.863 -0.076 -0.533 -3.059 0.268 HO3 Z6J 15 Z6J H2 H41 H 0 1 N N N -2.760 -30.111 -1.864 -2.036 -0.775 1.318 H2 Z6J 16 Z6J HO2 H4O H 0 1 N Y N -1.446 -31.537 -3.152 -2.939 -0.343 -0.850 HO2 Z6J 17 Z6J H1 H51 H 0 1 N N N -0.977 -28.870 -2.269 -1.202 1.381 1.621 H1 Z6J 18 Z6J HO1 HOT H 0 1 N Y N 0.713 -30.368 -2.562 -1.746 2.756 -0.260 HO1 Z6J 19 Z6J HO5 H1O H 0 1 N Y N -3.768 -27.702 1.258 4.032 0.770 -0.248 HO5 Z6J 20 # # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal Z6J O5 C5 SING N N 1 Z6J C5 C4 SING N N 2 Z6J C4 O4 SING N N 3 Z6J C4 C3 SING N N 4 Z6J O4 C1 SING N N 5 Z6J C3 O3 SING N N 6 Z6J C3 C2 SING N N 7 Z6J C2 O2 SING N N 8 Z6J C2 C1 SING N N 9 Z6J C1 O1 SING N N 10 Z6J C5 H51 SING N N 11 Z6J C5 H52 SING N N 12 Z6J C4 H4 SING N N 13 Z6J C3 H3 SING N N 14 Z6J C1 H1 SING N N 15 Z6J O3 HO3 SING N N 16 Z6J C2 H2 SING N N 17 Z6J O2 HO2 SING N N 18 Z6J O1 HO1 SING N N 19 Z6J O5 HO5 SING N N 20 # # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor Z6J SMILES ACDLabs 12.01 "OC1C(OC(O)C1O)CO" Z6J InChI InChI 1.03 "InChI=1S/C5H10O5/c6-1-2-3(7)4(8)5(9)10-2/h2-9H,1H2/t2-,3-,4-,5+/m0/s1" Z6J InChIKey InChI 1.03 HMFHBZSHGGEWLO-NEEWWZBLSA-N Z6J SMILES_CANONICAL CACTVS 3.370 "OC[C@@H]1O[C@@H](O)[C@@H](O)[C@H]1O" Z6J SMILES CACTVS 3.370 "OC[CH]1O[CH](O)[CH](O)[CH]1O" Z6J SMILES_CANONICAL "OpenEye OEToolkits" 1.7.6 "C([C@H]1[C@@H]([C@@H]([C@@H](O1)O)O)O)O" Z6J SMILES "OpenEye OEToolkits" 1.7.6 "C(C1C(C(C(O1)O)O)O)O" # # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier Z6J "SYSTEMATIC NAME" ACDLabs 12.01 alpha-L-ribofuranose Z6J "SYSTEMATIC NAME" "OpenEye OEToolkits" 1.7.6 "(2R,3S,4R,5S)-5-(hydroxymethyl)oxolane-2,3,4-triol" Z6J "CONDENSED IUPAC CARBOHYDRATE SYMBOL" GMML 1.0 LRibfa Z6J "COMMON NAME" GMML 1.0 a-L-ribofuranose Z6J "IUPAC CARBOHYDRATE SYMBOL" PDB-CARE 1.0 a-L-Ribf Z6J "SNFG CARBOHYDRATE SYMBOL" GMML 1.0 Rib # # loop_ _pdbx_chem_comp_feature.comp_id _pdbx_chem_comp_feature.type _pdbx_chem_comp_feature.value _pdbx_chem_comp_feature.source _pdbx_chem_comp_feature.support Z6J "CARBOHYDRATE ISOMER" L PDB ? Z6J "CARBOHYDRATE RING" furanose PDB ? Z6J "CARBOHYDRATE ANOMER" alpha PDB ? Z6J "CARBOHYDRATE PRIMARY CARBONYL GROUP" aldose PDB ? # # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site Z6J "Create component" 2012-12-19 RCSB Z6J "Initial release" 2014-05-28 RCSB Z6J "Other modification" 2019-08-12 RCSB Z6J "Other modification" 2019-12-19 RCSB Z6J "Other modification" 2020-07-03 RCSB Z6J "Modify synonyms" 2020-07-17 RCSB Z6J "Modify atom id" 2020-07-17 RCSB Z6J "Modify component atom id" 2020-07-17 RCSB ##