data_32O # _chem_comp.id 32O _chem_comp.name beta-L-ribofuranose _chem_comp.type "L-saccharide, beta linking" _chem_comp.pdbx_type ATOMS _chem_comp.formula "C5 H10 O5" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms "beta-L-ribose; L-ribose; ribose" _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2014-05-29 _chem_comp.pdbx_modified_date 2020-07-17 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 150.130 _chem_comp.one_letter_code ? _chem_comp.three_letter_code 32O _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 4QEH _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site RCSB # # loop_ _pdbx_chem_comp_synonyms.ordinal _pdbx_chem_comp_synonyms.comp_id _pdbx_chem_comp_synonyms.name _pdbx_chem_comp_synonyms.provenance _pdbx_chem_comp_synonyms.type 1 32O beta-L-ribose PDB ? 2 32O L-ribose PDB ? 3 32O ribose PDB ? # # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal 32O O5 "O5'" O 0 1 N N N -9.279 -19.155 -45.258 -3.260 -0.495 -0.282 O5 32O 1 32O C5 "C5'" C 0 1 N N N -10.355 -18.482 -45.914 -2.305 0.296 0.427 C5 32O 2 32O C4 "C4'" C 0 1 N N S -11.328 -17.769 -44.940 -0.938 0.175 -0.250 C4 32O 3 32O O4 "O4'" O 0 1 N N N -12.360 -18.680 -44.483 -0.431 -1.171 -0.120 O4 32O 4 32O C3 "C3'" C 0 1 N N R -12.008 -16.603 -45.630 0.101 1.059 0.474 C3 32O 5 32O O3 "O3'" O 0 1 N N N -11.423 -15.326 -45.201 0.272 2.298 -0.218 O3 32O 6 32O C2 "C2'" C 0 1 N N S -13.451 -16.743 -45.147 1.401 0.227 0.425 C2 32O 7 32O O2 "O2'" O 0 1 N N N -13.621 -16.104 -43.864 2.416 0.926 -0.298 O2 32O 8 32O C1 "C1'" C 0 1 N N S -13.628 -18.261 -45.007 0.994 -1.062 -0.322 C1 32O 9 32O O1 "O1'" O 0 1 N Y N -13.958 -18.847 -46.296 1.665 -2.194 0.237 O1 32O 10 32O HO5 H1 H 0 1 N Y N -8.722 -19.569 -45.906 -4.151 -0.466 0.092 HO5 32O 11 32O H51 H2 H 0 1 N N N -9.931 -17.729 -46.595 -2.622 1.339 0.421 H51 32O 12 32O H52 H3 H 0 1 N N N -10.925 -19.222 -46.495 -2.234 -0.056 1.456 H52 32O 13 32O H4 H4 H 0 1 N N N -10.752 -17.392 -44.082 -1.010 0.453 -1.301 H4 32O 14 32O H3 H5 H 0 1 N N N -11.957 -16.718 -46.723 -0.200 1.238 1.506 H3 32O 15 32O HO3 H6 H 0 1 N Y N -10.528 -15.266 -45.514 0.957 2.868 0.159 HO3 32O 16 32O H2 H7 H 0 1 N N N -14.149 -16.343 -45.897 1.743 -0.007 1.433 H2 32O 17 32O HO2 H8 H 0 1 N Y N -14.522 -16.200 -43.579 3.255 0.449 -0.360 HO2 32O 18 32O H1 H9 H 0 1 N N N -14.430 -18.464 -44.282 1.221 -0.972 -1.385 H1 32O 19 32O HO1 H10 H 0 1 N Y N -14.066 -19.786 -46.199 1.447 -3.032 -0.194 HO1 32O 20 # # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal 32O O1 C1 SING N N 1 32O C5 O5 SING N N 2 32O C5 C4 SING N N 3 32O C3 O3 SING N N 4 32O C3 C2 SING N N 5 32O C3 C4 SING N N 6 32O C2 C1 SING N N 7 32O C2 O2 SING N N 8 32O C1 O4 SING N N 9 32O C4 O4 SING N N 10 32O O5 HO5 SING N N 11 32O C5 H51 SING N N 12 32O C5 H52 SING N N 13 32O C4 H4 SING N N 14 32O C3 H3 SING N N 15 32O O3 HO3 SING N N 16 32O C2 H2 SING N N 17 32O O2 HO2 SING N N 18 32O C1 H1 SING N N 19 32O O1 HO1 SING N N 20 # # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor 32O SMILES ACDLabs 12.01 "OC1C(OC(O)C1O)CO" 32O InChI InChI 1.03 "InChI=1S/C5H10O5/c6-1-2-3(7)4(8)5(9)10-2/h2-9H,1H2/t2-,3-,4-,5-/m0/s1" 32O InChIKey InChI 1.03 HMFHBZSHGGEWLO-FCAWWPLPSA-N 32O SMILES_CANONICAL CACTVS 3.385 "OC[C@@H]1O[C@H](O)[C@@H](O)[C@H]1O" 32O SMILES CACTVS 3.385 "OC[CH]1O[CH](O)[CH](O)[CH]1O" 32O SMILES_CANONICAL "OpenEye OEToolkits" 1.7.6 "C([C@H]1[C@@H]([C@@H]([C@H](O1)O)O)O)O" 32O SMILES "OpenEye OEToolkits" 1.7.6 "C(C1C(C(C(O1)O)O)O)O" # # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier 32O "SYSTEMATIC NAME" ACDLabs 12.01 beta-L-ribofuranose 32O "SYSTEMATIC NAME" "OpenEye OEToolkits" 1.7.6 "(2S,3S,4R,5S)-5-(hydroxymethyl)oxolane-2,3,4-triol" 32O "CONDENSED IUPAC CARBOHYDRATE SYMBOL" GMML 1.0 LRibfb 32O "COMMON NAME" GMML 1.0 b-L-ribofuranose 32O "IUPAC CARBOHYDRATE SYMBOL" PDB-CARE 1.0 b-L-Ribf 32O "SNFG CARBOHYDRATE SYMBOL" GMML 1.0 Rib # # loop_ _pdbx_chem_comp_feature.comp_id _pdbx_chem_comp_feature.type _pdbx_chem_comp_feature.value _pdbx_chem_comp_feature.source _pdbx_chem_comp_feature.support 32O "CARBOHYDRATE ISOMER" L PDB ? 32O "CARBOHYDRATE RING" furanose PDB ? 32O "CARBOHYDRATE ANOMER" beta PDB ? 32O "CARBOHYDRATE PRIMARY CARBONYL GROUP" aldose PDB ? # # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site 32O "Create component" 2014-05-29 RCSB 32O "Initial release" 2014-09-03 RCSB 32O "Other modification" 2019-08-12 RCSB 32O "Other modification" 2019-12-19 RCSB 32O "Other modification" 2020-07-03 RCSB 32O "Modify synonyms" 2020-07-17 RCSB 32O "Modify atom id" 2020-07-17 RCSB 32O "Modify component atom id" 2020-07-17 RCSB ##