data_1RK # _chem_comp.id 1RK _chem_comp.name ;6-methoxy-5-({(3S)-3-[(N-methyl-L-alanyl)amino]-4-oxo-2',3,3',4,5',6'-hexahydro-5H-spiro[1,5-benzoxazepine-2,4'-pyran]-5-yl}methyl)naphthalene-2-carboxylic acid ; _chem_comp.type NON-POLYMER _chem_comp.pdbx_type HETAIN _chem_comp.formula "C30 H33 N3 O7" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2013-05-08 _chem_comp.pdbx_modified_date 2013-11-22 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 547.599 _chem_comp.one_letter_code ? _chem_comp.three_letter_code 1RK _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 4KJV _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site RCSB # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal 1RK C29 C29 C 0 1 N N N 27.844 28.045 10.776 1.316 -4.789 1.890 C29 1RK 1 1RK O28 O28 O 0 1 N N N 27.859 29.448 11.116 1.028 -3.392 1.968 O28 1RK 2 1RK C27 C27 C 0 1 Y N N 28.505 29.900 12.272 1.978 -2.539 1.505 C27 1RK 3 1RK C30 C30 C 0 1 Y N N 29.310 29.085 13.090 3.169 -3.050 0.978 C30 1RK 4 1RK C31 C31 C 0 1 Y N N 29.897 29.591 14.248 4.137 -2.221 0.508 C31 1RK 5 1RK C32 C32 C 0 1 Y N N 29.708 30.965 14.583 3.946 -0.827 0.548 C32 1RK 6 1RK C34 C34 C 0 1 Y N N 30.289 31.511 15.738 4.929 0.050 0.069 C34 1RK 7 1RK C35 C35 C 0 1 Y N N 30.126 32.871 16.120 4.709 1.418 0.124 C35 1RK 8 1RK C38 C38 C 0 1 N N N 30.732 33.409 17.267 5.740 2.346 -0.379 C38 1RK 9 1RK O40 O40 O 0 1 N N N 30.387 34.534 17.729 6.777 1.912 -0.838 O40 1RK 10 1RK O39 O39 O 0 1 N N N 31.611 32.767 17.871 5.530 3.677 -0.329 O39 1RK 11 1RK C36 C36 C 0 1 Y N N 29.322 33.702 15.321 3.509 1.927 0.654 C36 1RK 12 1RK C37 C37 C 0 1 Y N N 28.761 33.170 14.164 2.547 1.093 1.123 C37 1RK 13 1RK C33 C33 C 0 1 Y N N 28.913 31.804 13.771 2.741 -0.301 1.081 C33 1RK 14 1RK C15 C15 C 0 1 Y N N 28.317 31.292 12.616 1.756 -1.181 1.555 C15 1RK 15 1RK C14 C14 C 0 1 N N N 27.489 32.120 11.814 0.467 -0.644 2.119 C14 1RK 16 1RK N13 N13 N 0 1 N N N 28.294 33.162 11.047 -0.473 -0.381 1.026 N13 1RK 17 1RK C16 C16 C 0 1 N N N 27.932 34.497 11.052 -1.276 -1.366 0.565 C16 1RK 18 1RK O17 O17 O 0 1 N N N 27.002 34.904 11.804 -1.179 -2.490 1.011 O17 1RK 19 1RK C12 C12 C 0 1 Y N N 29.451 32.756 10.347 -0.552 0.895 0.451 C12 1RK 20 1RK C21 C21 C 0 1 Y N N 29.459 31.599 9.554 -0.652 2.023 1.248 C21 1RK 21 1RK C19 C19 C 0 1 Y N N 30.621 31.230 8.818 -0.722 3.274 0.663 C19 1RK 22 1RK C20 C20 C 0 1 Y N N 31.771 32.022 8.898 -0.692 3.401 -0.713 C20 1RK 23 1RK C18 C18 C 0 1 Y N N 31.809 33.169 9.716 -0.594 2.277 -1.514 C18 1RK 24 1RK C11 C11 C 0 1 Y N N 30.615 33.536 10.415 -0.524 1.021 -0.937 C11 1RK 25 1RK O10 O10 O 0 1 N N N 30.742 34.684 11.200 -0.434 -0.090 -1.713 O10 1RK 26 1RK C9 C9 C 0 1 N N N 30.062 35.877 10.773 -1.608 -0.886 -1.853 C9 1RK 27 1RK C22 C22 C 0 1 N N N 30.834 36.497 9.621 -1.226 -2.263 -2.408 C22 1RK 28 1RK C23 C23 C 0 1 N N N 32.034 37.280 10.171 -0.614 -2.091 -3.800 C23 1RK 29 1RK O24 O24 O 0 1 N N N 31.832 38.025 11.349 -1.550 -1.426 -4.651 O24 1RK 30 1RK C25 C25 C 0 1 N N N 31.390 37.231 12.399 -1.911 -0.116 -4.208 C25 1RK 31 1RK C26 C26 C 0 1 N N N 29.969 36.783 11.991 -2.572 -0.207 -2.831 C26 1RK 32 1RK C7 C7 C 0 1 N N S 28.635 35.481 10.201 -2.293 -1.062 -0.505 C7 1RK 33 1RK N6 N6 N 0 1 N N N 27.728 36.614 9.859 -3.002 0.171 -0.155 N6 1RK 34 1RK C5 C5 C 0 1 N N N 26.894 36.569 8.808 -4.056 0.128 0.683 C5 1RK 35 1RK O8 O8 O 0 1 N N N 26.814 35.621 8.013 -4.418 -0.932 1.147 O8 1RK 36 1RK C3 C3 C 0 1 N N S 25.859 37.730 8.782 -4.786 1.397 1.042 C3 1RK 37 1RK C4 C4 C 0 1 N N N 24.683 37.385 9.806 -3.816 2.369 1.718 C4 1RK 38 1RK N1 N1 N 0 1 N N N 25.323 37.914 7.442 -5.887 1.085 1.962 N1 1RK 39 1RK C2 C2 C 0 1 N N N 26.322 38.371 6.408 -6.946 2.099 1.880 C2 1RK 40 1RK H1 H1 H 0 1 N N N 27.289 27.901 9.837 1.479 -5.069 0.849 H1 1RK 41 1RK H2 H2 H 0 1 N N N 28.877 27.687 10.650 2.214 -5.008 2.469 H2 1RK 42 1RK H3 H3 H 0 1 N N N 27.355 27.478 11.582 0.477 -5.357 2.292 H3 1RK 43 1RK H4 H4 H 0 1 N N N 29.475 28.053 12.816 3.321 -4.119 0.944 H4 1RK 44 1RK H5 H5 H 0 1 N N N 30.489 28.950 14.885 5.051 -2.630 0.104 H5 1RK 45 1RK H6 H6 H 0 1 N N N 30.888 30.868 16.366 5.852 -0.337 -0.339 H6 1RK 46 1RK H7 H7 H 0 1 N N N 31.898 33.260 18.631 6.234 4.245 -0.669 H7 1RK 47 1RK H8 H8 H 0 1 N N N 29.144 34.730 15.599 3.352 2.995 0.689 H8 1RK 48 1RK H9 H9 H 0 1 N N N 28.180 33.823 13.530 1.631 1.498 1.527 H9 1RK 49 1RK H10 H10 H 0 1 N N N 26.768 32.637 12.464 0.035 -1.376 2.801 H10 1RK 50 1RK H11 H11 H 0 1 N N N 26.947 31.489 11.094 0.664 0.283 2.658 H11 1RK 51 1RK H12 H12 H 0 1 N N N 28.575 30.981 9.501 -0.676 1.926 2.323 H12 1RK 52 1RK H13 H13 H 0 1 N N N 30.614 30.343 8.201 -0.799 4.155 1.284 H13 1RK 53 1RK H14 H14 H 0 1 N N N 32.644 31.750 8.324 -0.746 4.380 -1.164 H14 1RK 54 1RK H15 H15 H 0 1 N N N 32.712 33.754 9.813 -0.572 2.381 -2.589 H15 1RK 55 1RK H16 H16 H 0 1 N N N 30.175 37.179 9.064 -0.498 -2.733 -1.746 H16 1RK 56 1RK H17 H17 H 0 1 N N N 31.191 35.702 8.950 -2.116 -2.888 -2.475 H17 1RK 57 1RK H18 H18 H 0 1 N N N 32.838 36.556 10.371 0.296 -1.496 -3.727 H18 1RK 58 1RK H19 H19 H 0 1 N N N 32.359 37.981 9.388 -0.376 -3.070 -4.216 H19 1RK 59 1RK H20 H20 H 0 1 N N N 32.048 36.359 12.528 -1.016 0.504 -4.141 H20 1RK 60 1RK H21 H21 H 0 1 N N N 31.359 37.809 13.334 -2.608 0.328 -4.918 H21 1RK 61 1RK H22 H22 H 0 1 N N N 29.360 37.666 11.747 -3.488 -0.794 -2.906 H22 1RK 62 1RK H23 H23 H 0 1 N N N 29.503 36.235 12.823 -2.809 0.795 -2.474 H23 1RK 63 1RK H24 H24 H 0 1 N N N 28.844 34.966 9.252 -3.007 -1.882 -0.567 H24 1RK 64 1RK H25 H25 H 0 1 N N N 27.741 37.434 10.431 -2.712 1.019 -0.527 H25 1RK 65 1RK H26 H26 H 0 1 N N N 26.353 38.652 9.122 -5.187 1.854 0.137 H26 1RK 66 1RK H27 H27 H 0 1 N N N 25.102 37.249 10.814 -4.344 3.286 1.978 H27 1RK 67 1RK H28 H28 H 0 1 N N N 23.955 38.210 9.820 -3.415 1.911 2.622 H28 1RK 68 1RK H29 H29 H 0 1 N N N 24.181 36.459 9.489 -2.999 2.600 1.035 H29 1RK 69 1RK H30 H30 H 0 1 N N N 24.594 38.597 7.491 -5.551 0.989 2.909 H30 1RK 70 1RK H32 H32 H 0 1 N N N 25.820 38.479 5.435 -6.536 3.075 2.144 H32 1RK 71 1RK H33 H33 H 0 1 N N N 26.747 39.339 6.711 -7.339 2.133 0.864 H33 1RK 72 1RK H34 H34 H 0 1 N N N 27.128 37.627 6.324 -7.749 1.844 2.571 H34 1RK 73 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal 1RK C2 N1 SING N N 1 1RK N1 C3 SING N N 2 1RK O8 C5 DOUB N N 3 1RK C3 C5 SING N N 4 1RK C3 C4 SING N N 5 1RK C5 N6 SING N N 6 1RK C19 C20 DOUB Y N 7 1RK C19 C21 SING Y N 8 1RK C20 C18 SING Y N 9 1RK C21 C12 DOUB Y N 10 1RK C22 C23 SING N N 11 1RK C22 C9 SING N N 12 1RK C18 C11 DOUB Y N 13 1RK N6 C7 SING N N 14 1RK C23 O24 SING N N 15 1RK C7 C9 SING N N 16 1RK C7 C16 SING N N 17 1RK C12 C11 SING Y N 18 1RK C12 N13 SING N N 19 1RK C11 O10 SING N N 20 1RK C9 O10 SING N N 21 1RK C9 C26 SING N N 22 1RK C29 O28 SING N N 23 1RK N13 C16 SING N N 24 1RK N13 C14 SING N N 25 1RK C16 O17 DOUB N N 26 1RK O28 C27 SING N N 27 1RK O24 C25 SING N N 28 1RK C14 C15 SING N N 29 1RK C26 C25 SING N N 30 1RK C27 C15 DOUB Y N 31 1RK C27 C30 SING Y N 32 1RK C15 C33 SING Y N 33 1RK C30 C31 DOUB Y N 34 1RK C33 C37 DOUB Y N 35 1RK C33 C32 SING Y N 36 1RK C37 C36 SING Y N 37 1RK C31 C32 SING Y N 38 1RK C32 C34 DOUB Y N 39 1RK C36 C35 DOUB Y N 40 1RK C34 C35 SING Y N 41 1RK C35 C38 SING N N 42 1RK C38 O40 DOUB N N 43 1RK C38 O39 SING N N 44 1RK C29 H1 SING N N 45 1RK C29 H2 SING N N 46 1RK C29 H3 SING N N 47 1RK C30 H4 SING N N 48 1RK C31 H5 SING N N 49 1RK C34 H6 SING N N 50 1RK O39 H7 SING N N 51 1RK C36 H8 SING N N 52 1RK C37 H9 SING N N 53 1RK C14 H10 SING N N 54 1RK C14 H11 SING N N 55 1RK C21 H12 SING N N 56 1RK C19 H13 SING N N 57 1RK C20 H14 SING N N 58 1RK C18 H15 SING N N 59 1RK C22 H16 SING N N 60 1RK C22 H17 SING N N 61 1RK C23 H18 SING N N 62 1RK C23 H19 SING N N 63 1RK C25 H20 SING N N 64 1RK C25 H21 SING N N 65 1RK C26 H22 SING N N 66 1RK C26 H23 SING N N 67 1RK C7 H24 SING N N 68 1RK N6 H25 SING N N 69 1RK C3 H26 SING N N 70 1RK C4 H27 SING N N 71 1RK C4 H28 SING N N 72 1RK C4 H29 SING N N 73 1RK N1 H30 SING N N 74 1RK C2 H32 SING N N 75 1RK C2 H33 SING N N 76 1RK C2 H34 SING N N 77 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor 1RK SMILES ACDLabs 12.01 "O=C(O)c1ccc2c(c1)ccc(OC)c2CN3c5c(OC4(C(C3=O)NC(=O)C(NC)C)CCOCC4)cccc5" 1RK InChI InChI 1.03 "InChI=1S/C30H33N3O7/c1-18(31-2)27(34)32-26-28(35)33(23-6-4-5-7-25(23)40-30(26)12-14-39-15-13-30)17-22-21-10-8-20(29(36)37)16-19(21)9-11-24(22)38-3/h4-11,16,18,26,31H,12-15,17H2,1-3H3,(H,32,34)(H,36,37)/t18-,26+/m0/s1" 1RK InChIKey InChI 1.03 PXBQMHIHZVFKSD-HFJWLAOPSA-N 1RK SMILES_CANONICAL CACTVS 3.370 "CN[C@@H](C)C(=O)N[C@@H]1C(=O)N(Cc2c(OC)ccc3cc(ccc23)C(O)=O)c4ccccc4OC15CCOCC5" 1RK SMILES CACTVS 3.370 "CN[CH](C)C(=O)N[CH]1C(=O)N(Cc2c(OC)ccc3cc(ccc23)C(O)=O)c4ccccc4OC15CCOCC5" 1RK SMILES_CANONICAL "OpenEye OEToolkits" 1.7.6 "C[C@@H](C(=O)N[C@@H]1C(=O)N(c2ccccc2OC13CCOCC3)Cc4c5ccc(cc5ccc4OC)C(=O)O)NC" 1RK SMILES "OpenEye OEToolkits" 1.7.6 "CC(C(=O)NC1C(=O)N(c2ccccc2OC13CCOCC3)Cc4c5ccc(cc5ccc4OC)C(=O)O)NC" # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier 1RK "SYSTEMATIC NAME" ACDLabs 12.01 ;6-methoxy-5-({(3S)-3-[(N-methyl-L-alanyl)amino]-4-oxo-2',3,3',4,5',6'-hexahydro-5H-spiro[1,5-benzoxazepine-2,4'-pyran]-5-yl}methyl)naphthalene-2-carboxylic acid ; 1RK "SYSTEMATIC NAME" "OpenEye OEToolkits" 1.7.6 ;6-methoxy-5-[[(3S)-3-[[(2S)-2-(methylamino)propanoyl]amino]-4-oxidanylidene-spiro[3H-1,5-benzoxazepine-2,4'-oxane]-5-yl]methyl]naphthalene-2-carboxylic acid ; # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site 1RK "Create component" 2013-05-08 RCSB 1RK "Initial release" 2013-11-27 RCSB #